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. 2018 Dec 11;9:3047. doi: 10.3389/fmicb.2018.03047

Table 1.

Primer sequences used for amplification of reference and target genes, amplicon length, amplification temperature (Ta) and melting temperature (Tm).

Function Gene Primer Sequence (forward/reverse primer) Accession number Matrix Amplicon length (bp) Melting temperature (Tm) Amplification temperature (Ta)
Reference genes EF1 (EFl-α elongation factor) 5′-GAACTGGGTGCTTGATAGGC -3′/
5′- AACCAAAATATCCGGAGTAAAAGA-3′
GU585871 Leaves 150 81.5°C
39SRP (39S Ribosomal protein L41-A) 5′ GACTGACTTCAAGCTTAAACC -3′/
5′ GATATAACAGGGAATACAGCAC-3′
XM 002285709.1 282 81°C
ADH2 (Alcohol dehydrogenase 2) 5′-GACCATGTTCTTCCTGTATTCAC-3′/
5′- GTAGCACCAAGACCTGTAGAG-3′
NM_001281154.1 Green stem 293 82.5°C
60SRP (60S Ribosomal Protein L18) 5′-ATCTACCTCAAGCTCCTAGTC -3′/
5′- CAATCTTGTCCTCCTTTCCT -3′
XM 002270599 166 81.5°C
Defense proteins Glue (β-1,3 glucanase) 5′-TCAATGGCTGCAATGGTGC -3′/
5′- CGGTCGATGTTGCGAGATTTA-3′
DQ267748 Leaves/green stem 155 81°C
PR6 (Serine-protease inhibitor 6) 5′-AGGGAACAATCGTTACCCAAG -3′/
5′- CCGATGGTAGGGACACTGAT-3′
AY156047 Leaves 91 80.5°C
Detoxification and stress tolerance Hahl (Haloacid dehalogenase hydrolase) 5′-CCCTCAGGATAGCCAACATCA -3′/
5′- AGGTGCCAACCAGAACTGTGT-3′
NM_001281217 Leaves/green stem 111 81°C 60°C
HSP (alpha crystalline heat shock protein) 5′-TCGGTGGAGGATGACTTGCT -37
5′- CGTGTGCTGTACGAGCTGAAG-3′
XM_002272382 Leaves/green stem 101 81°C
GST5 (Glutathione S-transferase 5) 5′-GCAGAAGCTGCCAGTGAAATT-3′/
5′- GGCAAGCCATGAAAGTGACA-3′
XM 002277883 Leaves 101 79°C
Phenylpropanoid metabolism STS (Stilbene synthase) 5′-AGGAAGCAGCATTGAAGGCTC -3′/
5′- TGCACCAGGCATTTCTACACC-3′
FJ851185 Green stem 101 80.5°C
Cell wall compounds fascAGP (fasciclin-like arabinogalactan protein) 5′-CGAAACCCCAAAGCCTAAGAA -3′/
5′- GAAAACACAAAGGGGTTGCA-3′
XM 002280793.2 Green stem 101 80.5°C
Aquaporin PIP2.2 (aquaporin plasma membrane intrinsic protein 2-2) 5′-GGTTCAGTCTCCATTGCACATG -3′/
5′- TTGGCAGCACAGCAGATGTAT-3′
NM 001280956 Green stem 101 78°