Table 1.
Function | Gene | Primer Sequence (forward/reverse primer) | Accession number | Matrix | Amplicon length (bp) | Melting temperature (Tm) | Amplification temperature (Ta) |
---|---|---|---|---|---|---|---|
Reference genes | EF1 (EFl-α elongation factor) | 5′-GAACTGGGTGCTTGATAGGC -3′/ 5′- AACCAAAATATCCGGAGTAAAAGA-3′ |
GU585871 | Leaves | 150 | 81.5°C | |
39SRP (39S Ribosomal protein L41-A) | 5′ GACTGACTTCAAGCTTAAACC -3′/ 5′ GATATAACAGGGAATACAGCAC-3′ |
XM 002285709.1 | 282 | 81°C | |||
ADH2 (Alcohol dehydrogenase 2) | 5′-GACCATGTTCTTCCTGTATTCAC-3′/ 5′- GTAGCACCAAGACCTGTAGAG-3′ |
NM_001281154.1 | Green stem | 293 | 82.5°C | ||
60SRP (60S Ribosomal Protein L18) | 5′-ATCTACCTCAAGCTCCTAGTC -3′/ 5′- CAATCTTGTCCTCCTTTCCT -3′ |
XM 002270599 | 166 | 81.5°C | |||
Defense proteins | Glue (β-1,3 glucanase) | 5′-TCAATGGCTGCAATGGTGC -3′/ 5′- CGGTCGATGTTGCGAGATTTA-3′ |
DQ267748 | Leaves/green stem | 155 | 81°C | |
PR6 (Serine-protease inhibitor 6) | 5′-AGGGAACAATCGTTACCCAAG -3′/ 5′- CCGATGGTAGGGACACTGAT-3′ |
AY156047 | Leaves | 91 | 80.5°C | ||
Detoxification and stress tolerance | Hahl (Haloacid dehalogenase hydrolase) | 5′-CCCTCAGGATAGCCAACATCA -3′/ 5′- AGGTGCCAACCAGAACTGTGT-3′ |
NM_001281217 | Leaves/green stem | 111 | 81°C | 60°C |
HSP (alpha crystalline heat shock protein) | 5′-TCGGTGGAGGATGACTTGCT -37 5′- CGTGTGCTGTACGAGCTGAAG-3′ |
XM_002272382 | Leaves/green stem | 101 | 81°C | ||
GST5 (Glutathione S-transferase 5) | 5′-GCAGAAGCTGCCAGTGAAATT-3′/ 5′- GGCAAGCCATGAAAGTGACA-3′ |
XM 002277883 | Leaves | 101 | 79°C | ||
Phenylpropanoid metabolism | STS (Stilbene synthase) | 5′-AGGAAGCAGCATTGAAGGCTC -3′/ 5′- TGCACCAGGCATTTCTACACC-3′ |
FJ851185 | Green stem | 101 | 80.5°C | |
Cell wall compounds | fascAGP (fasciclin-like arabinogalactan protein) | 5′-CGAAACCCCAAAGCCTAAGAA -3′/ 5′- GAAAACACAAAGGGGTTGCA-3′ |
XM 002280793.2 | Green stem | 101 | 80.5°C | |
Aquaporin | PIP2.2 (aquaporin plasma membrane intrinsic protein 2-2) | 5′-GGTTCAGTCTCCATTGCACATG -3′/ 5′- TTGGCAGCACAGCAGATGTAT-3′ |
NM 001280956 | Green stem | 101 | 78° |