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. 2018 Dec 17;18:1262. doi: 10.1186/s12885-018-5190-z

Table 2.

Regions of interest assayed and primer sequences used. The commonly reported mutations in the exons of interest were taken from individual gene reports on COSMIC database [13]

Gene Exon Forward primer Reverse primer Previously reported mutations Implicated in
BRAF 11 CTGTTTGGCTTGACTTGAC CATATCCTATTATGACTTG Minor mutation hotspots at codons 466 and 469 Driver mutation, cutaneous melanoma
15 CTGATAGGAAAATGAGAT CAGCAGCATCTCAGGGCC p.V600E
NRAS 2 GTGGCTCGCCAATTAAC CCGACAAGTGAGAGAC Mutation hotspots at codons 12 and 13 Driver mutation, cutaneous melanoma
3 GCATTGCATTCCCTGTGG GAACACAAAGATCATCC p.Q61R, p.Q61L
KRAS 2 GATAGTGTATTAACC AACCTTTATCTGTATC Mutation hotspots at codons 12 and 13 Driver mutation,cutaneous melanoma
3 GTGCACTGTAATAATCT AATTACTCCTTAATGTC p.Q61R, p.Q61H
GNAQ 4 CTTTCCGTAGACAGCTTTG GTACTCAAGGCATAAAAG p. R183Q Driver mutation, uveal melanoma
5 GCTATATTTATGTTGAC CTATCATTTACTTGTATC p.Q209L, p.Q209R, p.Q209P
GNA11 4 GCAGCCGGCCTGAGCA ACACACACTGAGGATG p. R183C Driver mutation, uveal melanoma
5 GCCAGGTGGCTGAGT GCAGGGCCTTACTGG p.Q209L, p.Q209P
SF3B1 14 GGCCGAGAGATCATTTCTAAT AAGAAGGGCAATAAAGAAGGA Mutation hotspot at codon 625, and multiple other hotspots Prognosticating mutation in uveal melanoma, possible driver mutation
EIF1AX 1 GCCACGCCTGCGTCATAAAG CGAGCTCAGAGTCGCGTGTG Mutation hotspots at codons 2,3,4,6 Prognosticating mutation in uveal melanoma, possible driver mutation
2 AAAGGAAATTCCAAGAAGGGTAGGG TAATCGTGCCACCACACTTCACC Mutation hotspots at codons 13, 15