Table 2.
The accuracy of non-canonical interactions within recurrent RNA motifs predicted by RNAvista from canonical secondary structure
| Motif | PDB ID: Chain | Chain: Motif size [nts] | PPV | TPR | MCC |
|---|---|---|---|---|---|
| T-loop | 1J1U: B | 74: 9 | 1.000 | 1.000 | 1.000 |
| 4P5J | 86: 9 | 1.000 | 1.000 | 1.000 | |
| Sarcin | 1JBR: D | 31: 15 | 0.714 | 0.833 | 0.772 |
| 1Q93: B | 27: 15 | 1.000 | 1.000 | 1.000 | |
| GNRA | 1JID: B | 29: 6 | 1.000 | 0.500 | 0.707 |
| 1Q93: B | 27: 6 | 1.000 | 1.000 | 1.000 | |
| C-loop | 4JRC: A | 57: 7 | 0.000 | 0.000 | 0.000 |
| 5B2Q: B | 94: 7 | 1.000 | 1.000 | 1.000 | |
| K-turn | 5FJC: A | 94: 12 | 1.000 | 1.000 | 1.000 |
| 4QVI: B | 81: 12 | 1.000 | 1.000 | 1.000 | |
| Double sheared | 5AOX: F | 87: 8 | 0.500 | 1.000 | 0.707 |
| 1MMS: C | 58: 8 | 0.667 | 1.000 | 0.816 | |
| Triple sheared | 4GMA | 210: 12 | 1.000 | 1.000 | 1.000 |