Table 1.
Summary of genome assemblies and gene annotations.
| Technology | Illumina | PacBio |
|---|---|---|
| A. SEQUENCES | ||
| Raw data in Gb (Coverage) | 190.3 (~240 X) | 73.0 (~90 X) |
| Pre-processed data in Gb (%) | 156.4 (82%) | 73.0 (100%) |
| B. ASSEMBLY | ||
| No of Contigs | 1,657 | |
| Total Bases | 829,318,935 | |
| Average length | 500,494 | |
| Minimum length | 153 | |
| Maximum length | 12,966,191 | |
| N50 | 2,896,215 | |
| N (%) | 0 | |
| GC (%) | 41.23 | |
| C. GENE | ||
| # of genes | 28,343 (6.24 exons/ gene) | |
| Average gene length | 5,913 bp | |
| Average exon length | 178 bp | |
| Repeat elements | 31.11% | |
| Genome coverage (gene region) | 20.20% | |
| D. ANNOTATIONS | ||
| Blast hits | 21,605 (76.22%) | |
| No hits | 6,738 (23.77%) | |