Table 1.
Gene name | IGR length (bp) | AT% in 3′ terminus (1–250 bp) | TTS (bp)∗ | AT% in potential 3′ UTR |
---|---|---|---|---|
hmsT | 540 | 73% | 283∗ | 70% |
dsbA | 491 | 70% | 48∗∗ | 69% |
y0624 | 314 | 72% | Unknown | – |
y2025 | 837 | 68% | 63∗∗ | 59% |
y1235 | 371 | 70% | 250 | 70% |
lrhA | 677 | 70% | 60∗∗ | 72% |
y4098 | 349 | 69% | 284 | 68% |
y0961 | 459 | 70% | Unknown | – |
cafA | 825 | 45% | Unknown | – |
y2237 | 592 | 48% | 223∗∗ | 45% |
y2419 | 661 | 49% | Unknown | – |
y3757 | 540 | 57% | Unknown | – |
hmsP | 639 | 60% | Unknown | – |
amn | 424 | 55% | Unknown | – |
y1288 | 282 | 52% | Unknown | – |
nadB | 282 | 46% | 243∗∗ | 46% |
IGR, intergenic region; TTS, transcriptional termination site. ∗TTS of hmsT mRNA was determined by the 3′ RACE analysis as described in our previous study (Zhu et al., 2016). ∗∗Predicted Rho-independent TTS was determined based on the ARNold program. “Unknown” indicates the TTS is unknown.