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. 2018 Dec 11;9(6):e02408-18. doi: 10.1128/mBio.02408-18

TABLE 3.

SNP typing of post-travel CTX-M-EC

Straina Sample collection point (days post-travel) MLST Phylogenetic group
3b3 7 1193b B2
3b4 7 11930 B2
3c3 28 11930 B2
3d1 56 119363 B2
3d2 56 119352 B2
3d3 56 11930 B2
3d4 56 119363 B2
4a6 7 69b D
4b1 30 695 D
4b2 30 694 D
4b3 30 694 D
4b4 30 694 D
4c1 49 694 D
4c4 49 694 D
4e1 152 694 D
4e2 152 695 D
4e4 152 694 D
5.2a 4 post-Uzbekistan 38b D
5.2b 4 post-Uzbekistan 382 D
5.2c 4 post-Uzbekistan 382 D
5.2e 4 post-Uzbekistan 382 D
5.2f 4 post-Uzbekistan 382 D
5a1 3 post-India, 35 post-Uzbekistan 48d A
5a2 3 post-India, 35 post-Uzbekistan 4648 A
5a3 3 post-India, 35 post-Uzbekistan 4248 A
5a4 3 post-India, 35 post-Uzbekistan 3948 A
5b1 8 post-India 4848 A
5b3 8 post-India 3348 A
5b4 8 post-India 2648 A
5c4 28 post-India 4648 A
5e3 91 post-India 386 D
5e4 91 post-India 386 D
5f3 183 post-India 1276548 A
8b2 16 10b A
8b3 16 101 A
8b4 16 101 A
8c1 40 102 A
8c2 40 1043 A
8c3 40 102 A
8c4 40 102 A
8d1 58 101 A
8d2 58 1013331 A
8d4 58 1013323 A
9b1 14 261719 F
9b2 14 2617b F
9c1 35 26179 F
9c2 35 26175 F
9c3 35 26177 F
9c4 35 26171 F
9d1 91 26172 F
9d3 91 26172 F
9d4 91 26177 F
9e1 152 26174 F
9e2 152 26170 F
9e3 152 26176 F
9e4 152 26171 F
9f1 210 26173 F
9f2 210 26177 F
9f3 210 26175 F
9f4 210 26174 F
12a1 3 435 A
12a2 3 43b A
12a3 3 430 A
12a4 3 430 A
12b1 21 430 A
12b2 21 430 A
12b3 21 430 A
12b4 21 431 A
12c1 29 430 A
12c2 29 430 A
12c3 29 430 A
12c4 29 430 A
12d1 56 431 A
12d2 56 433 A
12d3 56 432 A
12d4 56 432 A
12e1b 115 430 A
12e2 115 430 A
12e3 115 431 A
12e4 115 431 A
16b2 40 131b B2
16c1 91 1314 B2
16c2 91 1313 B2
16c4 91 1312 B2
16e1 179 1313 B2
16e2 179 1314 B2
16e3 179 1313 B2
16e4 179 1316 B2
20a3 7 1625 NGc
20a4 7 162b NG
20b1 42 1620 NG
20b2 42 1620 NG
20b3 42 1620 NG
20b4 42 1620 NG
a

Isolate naming system: e.g., 3b3, where “3” stands for volunteer 3, “b” stands for the second post-travel fecal sample, and the following digit “3” stands for the third colony pick from the sample.

b

Reference strain for SNP comparisons for any given volunteer. SNPs are displayed as superscripts after the ST.

c

NG, no phylogenetic group assigned to the Warwick MLST.

d

Second reference strain where 2 STs are present (volunteer 5). SNPs are displayed as superscripts before the ST.