Table 1.
START App | Degust | ShinyNGS | DEIVA | VisRseq | ASAP | EXPath Tool | IRIS | iDEP | |
---|---|---|---|---|---|---|---|---|---|
Heatmap | O | O | O | O | O | O | |||
PCA/MDS | O | O | O | O | O | O | O | ||
Clustering of genes | O | O | O | O | O | ||||
Volcano/MA Plot | O | O | O | O | O | O | O | ||
Single gene plot | O | O | O | O | |||||
Diff. gene expression | O | O | O | O | O | O | O | ||
Co-expression | O | O | |||||||
Stand-alone R code | O | O | O | O | |||||
Pathway analysis | KEGG | KEGG | human& mouse | O | O | ||||
Gene ID conversion | O | ||||||||
API to KEGG, STRING-db | O | ||||||||
Complex models | O | O |
Note: “O” indicates the functionality is included in a tool.