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. 2018 Dec 19;13(12):e0208026. doi: 10.1371/journal.pone.0208026

Table 4. Differentially expressed gene-associated enriched functional annotations.

Gene expression
Functional annotationa Fold enrichmentb P-valuec NM > M M > NM
GO BP: 0016337 single organismal cell-cell adhesion 6.699 0.005 CDSN, DSP, PKP1, SCRIB
GO BP: 0008285 negative regulation of cell proliferation 3.240 0.006 CD9, ETV3, HDAC4, NF2, SFRP4, SPRY1, STRN, TFAP2A DNAJA3
GO BP: 0060070 canonical Wnt signaling pathway 6.029 0.008 BCL9L, MYC, PLPP3, SDC1, SFRP4
GO BP: 0051496 positive regulation of stress fiber assembly 7.420 0.014 ARHGEF10, BRAF, EVL, NF2
GO BP: 0008219 cell death 12.058 0.023 AXIN1, EMP2, PMP22
GO BP: 0032060 bleb assembly 10.336 0.031 EMP1, EMP2, PMP22
KP cfa04024: cAMP signaling pathway 2.969 0.045 AFDN, BRAF, CREBBP, FOS CALM3
KP cfa05210: Colorectal cancer 4.783 0.046 BRAF, FOS, MYC, PIK3R2

aGO BP: Gene Ontology Biological Process; KP: Kegg Pathway

bFold enrichment—Proportion of 177 differentially expressed genes with the functional annotation/proportion of ~4,846 genes expressed in the MCTs that have the functional annotation.

cP-value: Fisher Exact test p-value (EASE score) modified to reduce false positive results.