Table 4. Differentially expressed gene-associated enriched functional annotations.
Gene expression | ||||
---|---|---|---|---|
Functional annotationa | Fold enrichmentb | P-valuec | NM > M | M > NM |
GO BP: 0016337 single organismal cell-cell adhesion | 6.699 | 0.005 | CDSN, DSP, PKP1, SCRIB | |
GO BP: 0008285 negative regulation of cell proliferation | 3.240 | 0.006 | CD9, ETV3, HDAC4, NF2, SFRP4, SPRY1, STRN, TFAP2A | DNAJA3 |
GO BP: 0060070 canonical Wnt signaling pathway | 6.029 | 0.008 | BCL9L, MYC, PLPP3, SDC1, SFRP4 | |
GO BP: 0051496 positive regulation of stress fiber assembly | 7.420 | 0.014 | ARHGEF10, BRAF, EVL, NF2 | |
GO BP: 0008219 cell death | 12.058 | 0.023 | AXIN1, EMP2, PMP22 | |
GO BP: 0032060 bleb assembly | 10.336 | 0.031 | EMP1, EMP2, PMP22 | |
KP cfa04024: cAMP signaling pathway | 2.969 | 0.045 | AFDN, BRAF, CREBBP, FOS | CALM3 |
KP cfa05210: Colorectal cancer | 4.783 | 0.046 | BRAF, FOS, MYC, PIK3R2 |
aGO BP: Gene Ontology Biological Process; KP: Kegg Pathway
bFold enrichment—Proportion of 177 differentially expressed genes with the functional annotation/proportion of ~4,846 genes expressed in the MCTs that have the functional annotation.
cP-value: Fisher Exact test p-value (EASE score) modified to reduce false positive results.