Table 2.
Canonical URIs used in the main RDF datasets
| RDF dataset | A representative class of primary resources | Prefix of canonical URL |
|---|---|---|
| UniProt | core:Protein | http://purl.uniprot.org/uniprot/ |
| Ensembl | obo:SO_0001217 | http://rdf.ebi.ac.uk/resource/ensembl/ |
| ChEMBL | cco:Substance | http://rdf.ebi.ac.uk/resource/chembl/molecule/ |
| ExpressionAtlas | atlas:BaseLineExpressionValue | http://rdf.ebi.ac.uk/resource/expressionatlas/ |
| atlas:DifferentialExpressionRatio | http://rdf.ebi.ac.uk/resource/expressionatlas/ | |
| Reactome | biopax3:Pathway | http://identifiers.org/reactome/ |
| BioModels | sbmlrdf:SBMLModel | http://identifiers.org/biomodels.vocabulary# |
| BioSamples | biosd-terms:Sample | http://rdf.ebi.ac.uk/resource/biosamples/sample |
| PubChem | compound | http://rdf.ncbi.nlm.nih.gov/pubchem/compound/ |
| substance | http://rdf.ncbi.nlm.nih.gov/pubchem/substance/ | |
| MESH | meshv:TopicalDescriptor | http://id.nlm.nih.gov/mesh/ |
| wwPDB | PDBo:datablock | http://rdf.wwpdb.org/pdb/ |
These URIs are used to represent primary resources in each officially released RDF datasets.