Table 1.

Summary of results from quality control of SNPs for each farmed population genotyped with the 200K SNP array.

Population origin1	ng2	Call rate3	HWE4	MAF < 0.055	Final number of SNPs6
NAM	37	2600	188	106103	40316
SCO	43	923	62	34940	113282
NOR	43	994	87	11660	136466

¹Geographical origin of each farmed population: NAM, North America; SCO, Scotland; NOR, Norway.

²Number of genotyped samples.

³Number of excluded SNPs by the genotype call rate <0.95.

⁴Number of excluded SNPs by Hardy–Weinberg Equilibrium.

⁵Number of excluded SNPs with minor allele frequency <0.05.

⁶Number of SNPs retained for each population.