REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit ACTN4 | Abcam | Cat# ab108198; RRID: AB_10858236 |
Rabbit ARP3 | Abcam | ab151729 |
Rabbit CORTACTIN | Cell Signaling | Cat# 3503; RRID: AB_2115160 |
Rabbit ITGB1 | Santa Cruz | Cat# M-106; RRID: AB_2130101 |
Guinea pig NEPHRIN | Progene | Cat# Gp-N2 |
Rat Nidogen (ELM1) | Nordic-MUbio | Cat# X1778M |
Rabbit NMHC-IIA | Covance | Cat# PRB-440P; RRID: AB_291638 |
Rabbit NWASP | Cell Signaling | Cat# 4848S; RRID: AB_10694415 |
Mouse PAXILLIN | BD Transduction Lab. | Cat# 610051 |
Mouse PDH E2/E3 | Abcam | Cat# ab110333; RRID: AB_10862029 |
Rabbit P-MLC | Cell Signaling | Cat# 3671/3674; RRID: AB_2147464 |
Rabbit PODOCIN | Santa Cruz | Cat# P0372; RRID: AB_2267439 |
Mouse SYNPO | Progene | Cat# 65194 |
Mouse Tubulin | Sigma | N/A |
Mouse Vinculin | Abcam | Cat# SPM227; RRID: AB_883461 |
Rabbit WAVE2 (WASF2) | Atlas Antibodies | Cat# HPA045288; RRID: AB_2679287 |
Mouse WT-1 | Millipore | Cat# 05-753-clone 6F-H2; RRID: AB_309966 |
Rabbit YAP | Cell Signaling | Cat# 14074S; RRID: AB_2218911 |
Rabbit ZYXIN | Atlas Antibodies | Cat# HPA004835; RRID: AB_1080771 |
Cy™3 AffiniPure Donkey AntiGuinea Pig IgG (H+L) | Jackson Immuno | Cat# 706-165-148 |
Alexa fluor (488,555,633 – resp. species) | Thermo Fisher Scientifc | N/A |
DAPI | Thermo Fisher Scientifc | Cat# D21490 |
LTG | Vector Laboratories | Cat# FL-1321; RRID: AB_2336559 |
DBA | Vector Laboratories | Cat# RL-1032; RRID: AB_2336396 |
Alexa Fluor Phalloidin (546, 488) | Thermo Fisher Scientifc | Cat# A22283, A12379; RRID: AB_2315147 |
Biological Samples | ||
All biological samples were generated in this study and described in detail in the Results | University Medical Center Freiburg | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
Blebbistatin | Sigma-Aldrich | B0560 |
Calyculin A | Sigma-Aldrich | C5552 |
CK312 | Calbiochem | 182518 |
CK548 | Sigma-Aldrich | C7499 |
CK636 | Sigma-Aldrich | C7374 |
CK666 | Sigma-Aldrich | SML0006 |
CK689 | Calbiochem | 182517 |
CK869 | Calbiochem | 182516 |
Cytochalasin D | Sigma-Aldrich | C8273 |
Latrunculin A | Sigma-Aldrich | L5163 |
Nocodazole | Sigma-Aldrich | M1404 |
NSC23766 | Sigma-Aldrich | SML0952 |
SMIFH2 | Sigma-Aldrich | S4826 |
Y27632 | Calbiochem | 688000 |
Doxycycline hydrochloride | Fagron, Germany | 803873 |
Prolong Gold Antifade | Thermo Fisher Scientifc | P36930 |
Ibidi Mounting Medium | Ibidi | 50001 |
μ-Slide 8 Well, Collagen IV: #1.5 polymer | Ibidi | 80822 |
μ-Dish 35 mm, high, ibiTreat | Ibidi | 81156 |
μ-Dish 35 mm, high Glass Bottom | Ibidi | 81158 |
Nunc Lab-Tek Chamber Slide system 8-well | Sigma-Aldrich | C7182 |
BioFlex Culture Plate Collagen IV | Flexcell | BF-3001C-IV |
Fibronectin | Corning | 354008 |
Collagen IV from human placenta | Sigma-Aldrich | C5533 |
Matrigel | Corning | 356231 |
Bovine Type I Atelo-Collagen Solution | AdvancedBioMatrix | 5005 |
40% Acrylamide | Bio-Rad | 161-0140 |
2% Bis-acrylamide | Bio-Rad | 161-0142 |
DSP | Sigma-Aldrich | 803200 |
DPPB | Sigma-Aldrich | 16646 |
Sulfo-SANPAH | ThermoFisher Scientific | 22589 |
FluoSpheres | ThermoFisher Scientific | F8794 |
Collagenase, Type 2 | Worthington Biochemical | LS004176 |
Protease from Streptomyces griseus | Sigma-Aldrich | P6911 |
DNase I | AppliChem | A3778 |
Critical Commercial Assays | ||
MICROFLUORAL Mikroalbumin-Test | Progen | PR2005 |
Creatinine PAP LT-SYS | LT-Sys | LT-CR 0106 |
Deposited Data | ||
Raw and analyzed mass spectrometry proteomics data | This paper | ProteomeXchange Consortium via PRIDE partner repository with the dataset identifier PXD010626 and PXD010601 For reviewer access: Username: reviewer06821@ebi.ac.uk Password: K0FQ12Zk And Username: reviewer05438@ebi.ac.uk Password: 2NoS9SGe |
Experimental Models: Cell Lines | ||
Immortalized human podocytes (AB8/13) | M. Saleem, Bristol University | N/A |
Primary mouse podocytes (isolated from Arp3 and N-WASP conditional mice) | this study | N/A |
Experimental Models: Organisms/Strains | ||
mouse: N-WASPflox/flox | Cotta-de-Almeida et al. (2007) | N/A |
mouse: Arp3flox/flox | Arnold HH, TU Braunschweig | N/A |
mouse: Six2-Cre | Kobayashi et al. (2008) | N/A |
mouse: Nphs2∗Cre | Moeller et al. (2003) | N/A |
mouse: hNphs2∗rtTA∗TetOCre | Shigehara et al. (2003) | N/A |
mouse: Gt(ROSA)26Sortm4(ACTB-tdTomato,-EGFP)Luo/J | Muzumdar et al. (2007) | N/A |
mouse: PAX8∗rtTA∗TetOCre | Traykova-Brauch et al. (2008) | N/A |
Oligonucleotides | ||
Genotyping PCR primers (Arp3) Fw: AGGGACAGTCTGTGTTTCTCCTAATATC Rev: AGGTGTTGACAACATGCTAAGAGCT |
Eurofins | N/A |
Genotyping PCR primers (NWASP) Fw: CACTTCTTTGCCCACATACA Rev: TAAAATGGCAGTGACAATGATGAC |
Eurofins | N/A |
Genotyping PCR primers (Nphs2Cre, Six2Cre) Fw: GCATAACCAGTGAAACAGCATTGCTG Rev: GGACATGTTCAGGGATCGCCAGGCG |
Eurofins | N/A |
Genotyping PCR primers (Pax8rtTA) Fw: CCATGTCTAGACTGGACAAGA Rev: CTCCAGGCCACATATGATTAG |
Eurofins | N/A |
Genotyping PCR primers (Nphs2rtTA) Fw: CGCACTTCAGTTACTTCAGGTCCTC Rev: GCTTATGCCTGATGTTGATGATGC |
Eurofins | N/A |
Genotyping PCR primers (Gt(ROSA)26Sortm4(ACTB-tdTomato,-EGFP)Luo/J) Fw: CTCTGCTGCCTCCTGGCTTCT Rev(wt): CGAGGCGGATCACAAGCAATA Rev(mut): TCAATGGGCGGGGGTCGTT |
Eurofins | N/A |
Software and Algorithms | ||
Graph Pad Prism 6 Software | GraphPad Software | https://www.graphpad.com/scientific-software/prism/ |
Fiji Image Analyzer | FIJI | https://fiji.sc/ |
Cytoscape 3.2.1 | Cytoscape | http://www.cytoscape.org/ |