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. 2018 Dec 17;47(6):741–757.e8. doi: 10.1016/j.devcel.2018.11.011
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit ACTN4 Abcam Cat# ab108198; RRID: AB_10858236
Rabbit ARP3 Abcam ab151729
Rabbit CORTACTIN Cell Signaling Cat# 3503; RRID: AB_2115160
Rabbit ITGB1 Santa Cruz Cat# M-106; RRID: AB_2130101
Guinea pig NEPHRIN Progene Cat# Gp-N2
Rat Nidogen (ELM1) Nordic-MUbio Cat# X1778M
Rabbit NMHC-IIA Covance Cat# PRB-440P; RRID: AB_291638
Rabbit NWASP Cell Signaling Cat# 4848S; RRID: AB_10694415
Mouse PAXILLIN BD Transduction Lab. Cat# 610051
Mouse PDH E2/E3 Abcam Cat# ab110333; RRID: AB_10862029
Rabbit P-MLC Cell Signaling Cat# 3671/3674; RRID: AB_2147464
Rabbit PODOCIN Santa Cruz Cat# P0372; RRID: AB_2267439
Mouse SYNPO Progene Cat# 65194
Mouse Tubulin Sigma N/A
Mouse Vinculin Abcam Cat# SPM227; RRID: AB_883461
Rabbit WAVE2 (WASF2) Atlas Antibodies Cat# HPA045288; RRID: AB_2679287
Mouse WT-1 Millipore Cat# 05-753-clone 6F-H2; RRID: AB_309966
Rabbit YAP Cell Signaling Cat# 14074S; RRID: AB_2218911
Rabbit ZYXIN Atlas Antibodies Cat# HPA004835; RRID: AB_1080771
Cy™3 AffiniPure Donkey AntiGuinea Pig IgG (H+L) Jackson Immuno Cat# 706-165-148
Alexa fluor (488,555,633 – resp. species) Thermo Fisher Scientifc N/A
DAPI Thermo Fisher Scientifc Cat# D21490
LTG Vector Laboratories Cat# FL-1321; RRID: AB_2336559
DBA Vector Laboratories Cat# RL-1032; RRID: AB_2336396
Alexa Fluor Phalloidin (546, 488) Thermo Fisher Scientifc Cat# A22283, A12379; RRID: AB_2315147

Biological Samples

All biological samples were generated in this study and described in detail in the Results University Medical Center Freiburg N/A

Chemicals, Peptides, and Recombinant Proteins

Blebbistatin Sigma-Aldrich B0560
Calyculin A Sigma-Aldrich C5552
CK312 Calbiochem 182518
CK548 Sigma-Aldrich C7499
CK636 Sigma-Aldrich C7374
CK666 Sigma-Aldrich SML0006
CK689 Calbiochem 182517
CK869 Calbiochem 182516
Cytochalasin D Sigma-Aldrich C8273
Latrunculin A Sigma-Aldrich L5163
Nocodazole Sigma-Aldrich M1404
NSC23766 Sigma-Aldrich SML0952
SMIFH2 Sigma-Aldrich S4826
Y27632 Calbiochem 688000
Doxycycline hydrochloride Fagron, Germany 803873
Prolong Gold Antifade Thermo Fisher Scientifc P36930
Ibidi Mounting Medium Ibidi 50001
μ-Slide 8 Well, Collagen IV: #1.5 polymer Ibidi 80822
μ-Dish 35 mm, high, ibiTreat Ibidi 81156
μ-Dish 35 mm, high Glass Bottom Ibidi 81158
Nunc Lab-Tek Chamber Slide system 8-well Sigma-Aldrich C7182
BioFlex Culture Plate Collagen IV Flexcell BF-3001C-IV
Fibronectin Corning 354008
Collagen IV from human placenta Sigma-Aldrich C5533
Matrigel Corning 356231
Bovine Type I Atelo-Collagen Solution AdvancedBioMatrix 5005
40% Acrylamide Bio-Rad 161-0140
2% Bis-acrylamide Bio-Rad 161-0142
DSP Sigma-Aldrich 803200
DPPB Sigma-Aldrich 16646
Sulfo-SANPAH ThermoFisher Scientific 22589
FluoSpheres ThermoFisher Scientific F8794
Collagenase, Type 2 Worthington Biochemical LS004176
Protease from Streptomyces griseus Sigma-Aldrich P6911
DNase I AppliChem A3778

Critical Commercial Assays

MICROFLUORAL Mikroalbumin-Test Progen PR2005
Creatinine PAP LT-SYS LT-Sys LT-CR 0106

Deposited Data

Raw and analyzed mass spectrometry proteomics data This paper ProteomeXchange Consortium via PRIDE partner repository with the dataset identifier PXD010626 and PXD010601
For reviewer access:
Username: reviewer06821@ebi.ac.uk
Password: K0FQ12Zk
And Username: reviewer05438@ebi.ac.uk
Password: 2NoS9SGe

Experimental Models: Cell Lines

Immortalized human podocytes (AB8/13) M. Saleem, Bristol University N/A
Primary mouse podocytes (isolated from Arp3 and N-WASP conditional mice) this study N/A

Experimental Models: Organisms/Strains

mouse: N-WASPflox/flox Cotta-de-Almeida et al. (2007) N/A
mouse: Arp3flox/flox Arnold HH, TU Braunschweig N/A
mouse: Six2-Cre Kobayashi et al. (2008) N/A
mouse: Nphs2Cre Moeller et al. (2003) N/A
mouse: hNphs2rtTATetOCre Shigehara et al. (2003) N/A
mouse: Gt(ROSA)26Sortm4(ACTB-tdTomato,-EGFP)Luo/J Muzumdar et al. (2007) N/A
mouse: PAX8rtTATetOCre Traykova-Brauch et al. (2008) N/A

Oligonucleotides

Genotyping PCR primers (Arp3)
Fw: AGGGACAGTCTGTGTTTCTCCTAATATC
Rev: AGGTGTTGACAACATGCTAAGAGCT
Eurofins N/A
Genotyping PCR primers (NWASP)
Fw: CACTTCTTTGCCCACATACA
Rev: TAAAATGGCAGTGACAATGATGAC
Eurofins N/A
Genotyping PCR primers (Nphs2Cre, Six2Cre)
Fw: GCATAACCAGTGAAACAGCATTGCTG
Rev: GGACATGTTCAGGGATCGCCAGGCG
Eurofins N/A
Genotyping PCR primers (Pax8rtTA)
Fw: CCATGTCTAGACTGGACAAGA
Rev: CTCCAGGCCACATATGATTAG
Eurofins N/A
Genotyping PCR primers (Nphs2rtTA)
Fw: CGCACTTCAGTTACTTCAGGTCCTC
Rev: GCTTATGCCTGATGTTGATGATGC
Eurofins N/A
Genotyping PCR primers (Gt(ROSA)26Sortm4(ACTB-tdTomato,-EGFP)Luo/J)
Fw: CTCTGCTGCCTCCTGGCTTCT
Rev(wt): CGAGGCGGATCACAAGCAATA
Rev(mut): TCAATGGGCGGGGGTCGTT
Eurofins N/A

Software and Algorithms

Graph Pad Prism 6 Software GraphPad Software https://www.graphpad.com/scientific-software/prism/
Fiji Image Analyzer FIJI https://fiji.sc/
Cytoscape 3.2.1 Cytoscape http://www.cytoscape.org/