Table 3.
A list of genes differentially expressed between the gill and the air-breathing organ in Clarias batrachus
| Category name | Gene name | Gene ID | FDR |
|---|---|---|---|
| Acid-base balance | Solute carrier family 4 member 1 | g12078.t1 | 0 |
| Carbonic anhydrase | g8816.t1 | 0 | |
| Carbonic anhydrase 2 | g3019.t1 | 1.60E-07 | |
| Carbonic anhydrase 4 | g7074.t1 | 7.21E-07 | |
| Carbonic anhydrase 9 | g411.t1 | 5.37E-05 | |
| Carbonic anhydrase 6 | g456.t1 | 7.39E-04 | |
| Ion homeostasis | Sodium/potassium-transporting ATPase subunit alpha-1 | g15272.t1 | 0 |
| Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | g16367.t1 | 0 | |
| Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | g5688.t1 | 0 | |
| Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 | g9634.t1 | 0 | |
| Sodium potassium-transporting ATPase subunit beta-233 | g9311.t1 | 0 | |
| Adenosylhomocysteinase 3 | g1970.t1 | 2.72E-10 | |
| Adenosylhomocysteinase 3 | g1011.t1 | 1.19E-08 | |
| Calsequestrin-1 | g3495.t1 | 5.23E-04 | |
| Calsequestrin-2 | g9400.t1 | 3.67E-02 | |
| Pendrin | g2970.t1 | 0 | |
| Sodium/hydrogen exchanger 3 | g3908.t1 | 0 | |
| Elastic fiber formation | Transforming growth factor beta-2 | g2430.t1 | 8.22E-03 |
| Fibulin-1 | g4468.t1 | 9.66E-08 | |
| Transforming growth factor beta-3 | g14668.t1 | 2.68E-02 | |
| Fibulin-2 | g20129.t1 | 5.73E-03 | |
| Bone morphogenetic protein 4 | g189.t1 | 8.79E-06 | |
| Fibronectin | g6260.t1 | 0 | |
| Fibronectin | g12205.t1 | 9.01E-03 | |
| Latent-transforming growth factor beta-binding protein 3 | g14988.t1 | 8.22E-03 | |
| Oxygen binding and transport | Hemoglobin subunit alpha | g20835.t1 | 0 |
| Hemoglobin subunit beta | g20836.t1 | 3.55E-11 | |
| Hemoglobin subunit alpha | g20837.t1 | 0 | |
| Hemoglobin subunit beta | g20838.t1 | 0 | |
| Hemoglobin subunit beta | g21168.t1 | 0 | |
| Hemoglobin subunit alpha | g21169.t1 | 0 | |
| Hemoglobin subunit beta | g21170.t1 | 0 | |
| Hemoglobin subunit alpha | g21171.t1 | 0 | |
| Angiogenesis | Sphingosine 1-phosphate receptor 1 | g5232.t1 | 7.89E-03 |
| Fibronectin | g6260.t1 | 8.79E-06 | |
| Semaphorin-3E | g5331.t1 | 6.86E-05 | |
| C-X-C chemokine receptor type 4 | g23603.t1 | 0 | |
| Neuropilin-1a | g3757.t1 | 5.00E-02 | |
| Cadherin-5 | g21848.t1 | 7.36E-03 | |
| BMP-binding endothelial regulator protein | g7031.t1 | 2.71E-02 | |
| Bone morphogenetic protein 4 | g189.t1 | 5.73E-03 | |
| Bone morphogenetic protein 5 | g11279.t1 | 2.76E-03 | |
| Bone morphogenetic protein 8A | g14806.t1 | 9.26E-03 | |
| Bone morphogenetic protein receptor type-1A | g14843.t1 | 9.45E-05 | |
| Transforming growth factor beta-2 | g2430.t1 | 8.22E-03 | |
| Transforming growth factor beta-3 | g14668.t1 | 2.68E-02 | |
| Rho-related GTP-binding protein RhoB | g5763.t1 | 1.23E-09 | |
| Thrombospondin-1 | g5480.t1 | 3.33E-02 | |
| Mothers against decapentaplegic homolog 6 | g4737.t1 | 6.93E-13 | |
| Mothers against decapentaplegic homolog 6 | g4739.t1 | 3.88E-11 | |
| Mothers against decapentaplegic homolog 3 | g3356.t1 | 4.28E-03 |