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. 2018 Oct 11;115(10):1895–1905. doi: 10.1016/j.bpj.2018.10.004

Figure 6.

Figure 6

Comparison of the Alkbh5 structural ensemble with solution NMR data. (a) Agreement between the observed and back-calculated RDCs for the aMD/RDC refined ensemble of Alkbh5. Note that all the 188 experimental RDCs’ data were included in the calculation (see Table 1). (b) Agreement between measured and back-calculated Cα/Cβ secondary chemical shifts. Back-calculation of the NMR chemical shifts was done in Sparta+ (67). Predicted Cα/Cβ secondary chemical shifts are averaged over the aMD/RDC ensemble. R2 values for linear regression of the Cα and Cβ data are shown. (c) Sausage representation of the aMD/RDC ensemble generated using the software Pymol (70). Cartoons are colored according to the B-factor, as indicated by the color bar. B-factors were calculated using the formula Bi=8π2Ui2, where Bi and Ui are the B-factor and mean-square displacement of atom i, respectively. The overlay of the 20 conformers in the ensemble is shown in Fig. S3. To see this figure in color, go online.