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. 2018 Dec 22;18:368. doi: 10.1186/s12870-018-1574-0

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Phylogenetic and sequence analysis of the T. hassleriana B-class genes. a Alignment of PI orthologs from several species. b Maximum-likelihood phylogeny of PI orthologs. The PI orthologs belonging to Brassicaceae species are indicated in beige, the Cleomaceae PI orthologs in blue. c Maximum-likelihood phylogeny showing the position of the ThAP3 paralogs. Alignments for phylogenies were generated with a codon-based DNA-sequence algorithm. d Alignment of ThAP3 paralogs with AtAP3. The MADS-domain, the K-domain and the lineage-specific C-terminal motifs are indicated in A and D. Abbreviations: At = A. thaliana; Al = A. lyrata; Cr = Capsella rubella; Aa = Aethionema arabicum; Th = T. hassleriana; Gg = G. gynandropsis; Cp = Carica papaya; Tc = Theobroma cacao; Vv = Vitis vinifera; Pt = Populus trichocarpa