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Comparison of intrauterine pathogenic E. coli from different cows. (A) Phylogeny of intrauterine pathogenic E. coli isolated from this study. (B) Genome alignment of CTX-M positive intrauterine pathogenic E. coli. The chromosomal sequences of IUPECs collected from one animal were aligned by progressiveMauve. The background color gradient indicates homologous regions across strains. Prophages predicted by PHAST were labeled by black solid circles.
