Table 2.
Comparison of classifier performance on human datasets
Classifier | HumDiv | HumVar | ||||||
---|---|---|---|---|---|---|---|---|
FPR | acc | FPR | ||||||
0.05 | 0.10 | 0.20 | 0.05 | 0.10 | 0.20 | |||
TPR | TPR | acc | ||||||
Deep Forest | 0.950 | 0.986 | 0.996 | 0.951 | 0.584 | 0.749 | 0.876 | 0.842 |
Random Forest | 0.947 | 0.986 | 0.997 | 0.940 | 0.563 | 0.733 | 0.868 | 0.830 |
Neural Network | 0.916 | 0.972 | 0.993 | 0.939 | 0.548 | 0.716 | 0.857 | 0.827 |
Gaussian SVM | 0.916 | 0.975 | 0.995 | 0.940 | 0.551 | 0.719 | 0.857 | 0.829 |
Polynomial SVM | 0.917 | 0.973 | 0.995 | 0.940 | 0.549 | 0.716 | 0.854 | 0.828 |
Logistic Regression | 0.895 | 0.961 | 0.992 | 0.931 | 0.484 | 0.666 | 0.831 | 0.814 |
Linear SVM | 0.897 | 0.961 | 0.992 | 0.933 | 0.483 | 0.667 | 0.831 | 0.815 |
Boosted Gaussian NB | 0.850 | 0.936 | 0.977 | 0.805 | 0.445 | 0.650 | 0.822 | 0.812 |
Gaussian NB | 0.794 | 0.928 | 0.978 | 0.805 | 0.341 | 0.568 | 0.813 | 0.812 |
PolyPhen‐2 | 0.78 | 0.89 | 0.96 | 0.89 | 0.53 | 0.68 | 0.83 | 0.81 |
TPRs (true‐positive rates) corresponding to a given FPR (false‐positive rate) are provided. The values of the accuracy metric (acc) are given for all classifiers ordered by decreasing of AUC metric (see Figure 1 and Figure S2). Cells with AUC or acc values no less than corresponding PolyPhen‐2 values are filled in yellow, while cells with AUC or acc values smaller than corresponding PolyPhen‐2 values are colored light blue. In each column, the maximal value is in bold.