Table 4.

Summary of genetic diversity and polymorphism analyses of TSWV N gene from different populations

Phylogroup	N	H	Hd	S	η	K	π	SS	NS	dS	dN	ω
All	35	28	0.983	92	93	18.071	0.02335	165.21	608.79	0.08854	0.00565	0.0638
Clade I	12	8	0.894	13	13	2.682	0.00346	165.11	608.89	0.01221	0.00109	0.0892
Clade II	4	3	0.833	7	7	4.167	0.00538	165.67	608.33	0.00905	0.00438	0.4839
Clade III	3	2	0.667	2	2	1.333	0.00172	165.17	608.83	0.00807	0.00000	0
Clade V	4	4	1.000	10	10	5.000	0.00646	164.92	609.08	0.02729	0.00082	0.0300
Clade VI	5	5	1.000	10	10	4.000	0.00517	164.73	609.27	0.01699	0.00197	0.1159
Clade VII	7	6	0.952	18	18	5.619	0.00726	165.67	608.33	0.01895	0.00407	0.2147
Geographic regions
China	7	6	0.952	18	18	5.619	0.00726	165.67	608.33	0.01895	0.00407	0.2147
Iran	4	3	0.833	7	7	4.167	0.00538	165.67	608.33	0.00905	0.00438	0.4839
South Korea	5	5	1.000	10	10	4.000	0.00517	164.73	609.27	0.01699	0.00197	0.1159
USA	4	3	0.833	20	20	10.167	0.01314	165.17	608.83	0.05247	0.00246	0.0468
Spain	5	5	1.000	28	28	11.400	0.01473	164.83	609.17	0.05826	0.00295	0.0506
Italy	6	4	0.800	5	5	2.067	0.00267	165.06	608.94	0.01050	0.00055	0.0523
France	4	4	1.000	3	3	1.500	0.00194	165.33	608.67	0.00907	0.00000	0

N, number of isolates; H, number of haplotypes/isolates; Hd, haplotype diversity; S, number of polymorphic (Segregating) sites; η (Eta), total number of mutations; k, average number of nucleotide differences between sequences; π nucleotide diversity; SS, total number of synonymous sites analyzed; NS, total number of non-synonymous sites analyzed; dS, synonymous nucleotide diversity; dN, non-synonymous nucleotide diversity. Numbers in bold are maximum and minimum values between populations.