Table 1. Input assemblies for the whole-genome human graph.

Sample ID	Ethnicity	Citation	Download URL
AK1	Korean	( Seo et al., 2016)	https://www.ncbi.nlm.nih.gov/Traces/wgs?val=LPVO02#contigs
CHM1	European	( Chaisson et al., 2015; Steinberg et al., 2014)	https://www.ncbi.nlm.nih.gov/assembly/GCA_001297185.1/
CHM13	European	( Schneider et al., 2017)	https://www.ncbi.nlm.nih.gov/assembly/GCA_001015385.3
HG003	Ashkenazi	( Zook et al., 2016)	ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/ analysis/MtSinai_PacBio_Assembly_falcon_03282016/hg003_ p_and_a_ctg.fa
HG004	Ashkenazi	( Zook et al., 2016)	ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/ analysis/MtSinai_PacBio_Assembly_falcon_03282016/hg004_ p_and_a_ctg.fa
HX1	Han Chinese	( Shi et al., 2016)	http://hx1.wglab.org/data/hx1f4.3rdfixedv2.fa.gz
NA19240	Yoruba	( Steinberg et al., 2016)	https://www.ncbi.nlm.nih.gov/assembly/GCA_001524155.1/