Table 2.
Transcription Factor Genes Identified with Bulked Segregant Analysis or with Differential Expression Levels between Phenotypes
| Protein ID (Lenti7/6) | Location | BSAa | Stagesb | Domains |
|---|---|---|---|---|
| 537478/229775 | scaffold_25: 159517-160085 | M | Zn(2)-Cys(6) | |
| 535761/526822 | scaffold_14: 632028-634037 | YES (s) | M, P, YF | Transcription factor Tfb4 |
| 569405/572504 | scaffold_7: 1195929-1196337 | — | M, YF | Zn(2)-Cys(6) |
| 215353/566174 | scaffold_32: 341786-343826 | — | MF | Zn(2)-Cys(6) |
| 465877/613826 | scaffold_19: 280471-283089 | — | YF | Heat shock transcription factor |
| 567867/543015 | scaffold_5: 393051-396002 | — | YF | HOX domain |
| 573265/613178 | scaffold_24: 126363-128314 | — | YF | Serine/threonine protein kinase |
| 464098/502691 | scaffold_14: 412497-415601 | YES (ns) | — | Zn(2)-Cys(6) |
| 503037/584228 | scaffold_5: 1223891-1229088 | YES (s) | — | Zn(2)-Cys(6) |
| 509362/557565 | scaffold_14: 341275-343024 | YES (s) | — | Zn(2)-Cys(6) |
| 548499/586366 | scaffold_59: 106797-116305 | YES (ns) | — | Zinc finger, GATA-type |
| 599750/113648 | scaffold_59: 61101-62947 | YES (s) | — | HOX domain (hom1) |
a
n, nonsynonymous substitution; s, synonymous substitution.
b
Stages at which expression varies between phenotypes.