Table 2.
Details of the two novel SYNE1 variants found in this study.
| Position (GRCh37/hg19) | Exon (NM_033071.3) | cDNA change (NM_033071.3) | Protein change (NP_149062.1) | Mutation type | dbSNP | 1000 genomes | ESP6500 | ExAC | gnomAD | Mutation taster | GERP++ RS | CADD phred | ACMG category |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6:152542057-6:152542057 | 118/146 | c.21568C>T | p.Arg7190Ter | Non-sense mutation | Novel | Novel | Novel | 1.647e-5 | 4.064e-6 | Disease causing | 4.75 | 52 | pathogenic |
| 6:152583242-6:152583242 | 100/146 | c.18684G>A | p.Trp6228Ter | Non-sense mutation | Novel | Novel | 7.689e-5 | 8.236e-6 | Novel | Disease causing | 5.96 | 59 | pathogenic |
Details of two novel SYNE1 variants identified in this study. Novel = Absent in the corresponding database. Mutation Taster, GERP++, and CADD are tools of in silico predictive algorithms recommended by ACMG guidelines (29).