Table 2.
Gene Family | Primer Name | Primer Sequence (5′ to 3′) | Tm (°C) | Position | Amplicon (bp) |
---|---|---|---|---|---|
blaOXA | BlaOXA-FW | GGTTTCGGTAATGCTGAAATTGG | 61.18 | 214–236 | 114 |
BlaOXA-RW | GCTGTGTATGTGCTAATTGGGA | 61.19 | 327–306 | ||
blaVIM | BlaVIM-FW | CGACAGTCARCGAAATTCC | 61.39 | 105–123 | 133 |
BlaVIM-RW | CAATGGTCTSATTGTCCGTG | 61.34 | 238–219 | ||
blaSHV | BlaSHV-FW1 | CGTAGGCATGATAGAAATGGATC | 61.04 | 133–155 | 106 |
BlaSHV-RW1 | CGCAGAGCACTACTTTAAAGG | 61.33 | 239–218 | ||
BlaSHV-FW2 | GCCTCATTCAGTTCCGTTTC | 61.62 | 399–418 | 141 | |
BlaSHV-RW2 | CCATTACCATGAGCGATAACAG | 61.22 | 540–518 | ||
blaTEM | BlaTEM-FW | GCCAACTTACTTCTGACAACG | 61.80 | 1699–1719 | 213 |
BlaTEM-RW | CGTTTGGAATGGCTTCATTC | 60.13 | 1912–1892 | ||
blaIMP | BlaIMP-FW1 | GGAATAGARTGGCTTAAYTCTCG | 60.92 | 319–332 | 183 |
BlaIMP-RW1 | CYASTASGTTATCTKGAGTGTG | 62.45 | 502–480 | ||
BlaIMP-FW2 | GGTGGAATAGARTGGCTTAAYTC | 61.11 | 316–339 | 192 | |
BlaIMP-RW2 | CCAAACCACTACGTTATCTKGAG | 61.29 | 508–485 | ||
blaROB | BlaROB-FW | CCAACATCGTGGAAAGTGTAG | 61.27 | 718–739 | 126 |
BlaROB-RW | GTAAATTGCGTACTCATGATTGC | 60.90 | 844–821 | ||
blaKPC | BlaKPC-FW | GCTAAACTCGAACAGGACTTTG | 61.79 | 100–121 | 117 |
BlaKPC-RW | CTTGAATGAGCTGCACAGTG | 61.90 | 216–197 | ||
blaCTX | BlaCTX-FW1 | GATACCGCAGATAATACGCAG | 60.79 | 161–181 | 116 |
BlaCTX-RW1 | CGTTTTGCGTTTCACTCTG | 60.28 | 276–258 | ||
BlaCTX-FW2 | GCTGATTCTGGTCACTTACTTC | 61.02 | 789–810 | 83 | |
BlaCTX-RW2 | CGCCGACGCTAATACATC | 60.69 | 855–872 | ||
BlaCTX-FW3 | CTGCTTAACTACAATCCSATTGC | 62.17 | 314–336 | 226 | |
BlaCTX-RW3 | GGAATGGCGGTATTKAGC | 60.86 | 539–522 | ||
blaCMY | BlaCMY-FW1 | GTTTGAGCTAGGATCGGTTAG | 60.25 | 337–357 | 123 |
BlaCMY-RW1 | CTGTTTGCCTGTCAGTTCTG | 61.48 | 460–441 | ||
BlaCMY-FW2 | GAACGAAGGCTACGTAGCT | 61.71 | 213–231 | 160 | |
BlaCMY-RW2 | CTGAAACGTGATTCGATCATCA | 61.08 | 372–351 | ||
blaDHA | BlaDHA-FW1 | GCATATTGATCTGCATATCTCCAC | 61.60 | 399–422 | 200 |
BlaDHA-RW1 | GCTGCTGTAACTGTTCTGC | 61.62 | 598–580 | ||
BlaDHA-FW2 | GCGGATCTGCTGAATTTCTATC | 61.54 | 464–485 | 147 | |
BlaDHA-RW2 | GCAGTCAGCAACTGCTCATAC | 61.05 | 610–591 | ||
BlaDHA-FW3 | GTAAGATTCCGCATCAAGCTG | 61.74 | 430–450 | 117 | |
BlaDHA-RW3 | GGGTTATCTCACACCTTTATTACTG | 61.08 | 546–522 | ||
blaP | BlaP-FW | GGAGAATATTGGGATTACAATGGC | 61.74 | 271–294 | 204 |
BlaP-RW | CGCATCATCGAGTGTGATTG | 61.80 | 474–455 | ||
blaCFX | BlaCFX-FW | CCAGTCATATCATTGACAGTGAG | 60.86 | 437–459 | 177 |
BlaCFX-RW | GACATTTCCTCTTCCGTATAAGC | 61.16 | 613–591 | ||
blaLAP | BlaLAP-FW | AGGGCTTGAACAACTTGAAC | 61.07 | 249–268 | 126 |
BlaLAP-RW | GTAATGGCAGCATTGCATAAC | 60.59 | 374–354 | ||
blaBIL | BlaBIL-FW | GCCGATATCGTTAATCGCAC | 61.65 | 100–119 | 128 |
BlaBIL-RW | GTTATTGGCGATATCGGCTTTA | 60.98 | 227–206 |
* All primers were designed in PerlPrimer v1.1.21 running under Debian 8 OS.