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. 2018 Dec 27;4(12):e01080. doi: 10.1016/j.heliyon.2018.e01080

Table 2.

PCR amplification of the Xanthomonas species amplified by Xanthomonas vasicola pv. musacearum specific primers.

Isolate name Host Country of origin Species and pathovar Sourcea Amplification byb
AvP-1 AvP-2 FTR HNS XFTR
NCPPB 2005 Enset Ethiopia Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 2251 Banana Ethiopia Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4378 Banana Uganda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4386 Banana Uganda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4388 Banana DRC Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4389 Banana Rwanda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4390 Banana Rwanda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4393 Banana Tanzania Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4394 Banana Tanzania Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4395 Banana Tanzania Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4392 Banana Tanzania Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4391 Banana Rwanda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 1381 Sugarcane Zimbabwe Xanthomonas vasicola pv. vasculorum D. Studholme, Exeter − − − − −
CFBP 5830 Sugarcane Madagascar Xanthomonas vasicola pv. vasculorum CFBP − − − − −
201500744NE Maize USA Xanthomonas vasicola pv. vasculorum J. Lang, CSU − − − − −
CO-5 Maize USA Xanthomonas vasicola pv. vasculorum J. Lang, CSU − − − − −
NCPPB 4387 Banana DRC Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4433 Banana Burundi Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 2877 Cannabis Romania Xanthomonas campestris pv. cannabis NCPPB − − − − −
NCPPB 989 Holcus sp USA Xanthomonas vasicola pv. holcicola NCPPB − − − − −
NCPPB 4434 Banana Kenya Xanthomonas vasicola pv. musacearum NCPPB + + + + +
KS-444 Maize USA Xanthomonas vasicola pv. vasculorum J. Lang, CSU − − − − −
NCPPB 1241 Sorghum Australia Xanthomonas vasicola pv. holcicola D.Studholme, Exeter − − − − −
NCPPB 206 Maize South Africa Xanthomonas vasicola pv. vasculorum NCPPB − − − − −
NCPPB 2417 Sorghum Newzealand Xanthomonas vasicola pv. holcicola NCPPB − − − − −
NCPPB 4384 Banana Uganda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4383 Banana Uganda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4381 Banana Uganda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4380 Banana Uganda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
NCPPB 4397 Banana Uganda Xanthomonas vasicola pv. musacearum NCPPB + + + + +
CIX 3 = CFBP2532T Rice India Xanthomonas oryzae pv. oryzae IPME − − − − −
CIX 63 = MAI55 Rice Mali Xanthomonas oryzae pv. oryzae IPME − − − − −
a

NCPPB: National Collection of Plant Pathogenic Bacteria; CFBP: Collection Franҫaise de Bactéries Phytopathogènes.

b

AvP - Avirulence protein; FTR - FIS transcriptional regulator; HNS - Histone-like nucleoid structuring protein; XFTR - XRE family transcriptional regulator.