Table 2.
Taqman SNP typing with the predesigned rs60910145 (C__89555688_10) assay results in errors in some individuals with the G2 allele: genotypes observed in a survey population of 1110 African American samples
| Genotype | rs60910145 assay |
Frequency observed, % | |
|---|---|---|---|
| Custom assay | Predesigned assay | ||
| G0,G0 | T | T | 47.5 |
| G0,G1GM | GT | GT | 25.7 |
| G0,G1G+ | T | T | 0.3 |
| G1GM,G1GM | G | G | 4.1 |
| G1GM,G1G+ | GT | GT | 0.5 |
| G0,G2 | T | T | 14.5 |
| G1GM,G2 | GT | Ga | 5.9 |
| G2,G2 | T | No amplification | 1.4 |
a
When combined with results from the rs73885319 and rs71785313 SNP assays, will result in an inferred haplotype not observed on African chromosomes.