Table 1. Nucleotide sequences of polymerase chain reaction primers and conditions for amplification of Anaplasma and Candidatus Neoehrlichia species genes.
Species and target genes | PCR primer sequence (5’-3’) | Annealing (°C/min) | PCR product size (bp) |
References |
---|---|---|---|---|
Anaplasma and Ehrlichia spp. groEL (external primer) |
GROEL -607F (5′-GAAGATGCWGTWGGWTGTACKGC-3′) GROEL 1294R (5′-AGMGCTTCWCCTTCWACRTCYTC-3′) |
57 | 688 | 30 |
Anaplasma and Ehrlichia spp. groEL (internal primer) |
GROEL- 667F (5′-ATTACTCAGAGTGCTTCTCARTG-3′) GROEL -1121R (5′-TGCATACCRTCAGTYTTTTCAAC-3′) |
57 | 445 | 30 |
Ca. Neoehrlichia 16S rRNA (external primer) |
16S-EC9-F (5′-TACCTTGTTACGACTT-3′) 16S-EC12A-R (5′-TGATCCTGGCTCAGAACGAACG-3′) |
41 | 1,462 | 5 |
Ca. Neoehrlichia 16S rRNA (internal primer) |
16S-IS58-62f (5′-GGAATAGCTGTTAGAAATGACA-3′) 16S-IS58-594r (5′-CTATCCTCTCTCGATCTCTAGTTT-3′) |
54 | 488 | 5 |
A. phagocytophilum 16S rRNA (external primer) |
AE1-F (5′-AAGCTTAACACATGCAAGTCGAA-3′) AE1-R (5′-AGTCACTGA CCCAACCTTAAATG-3′) |
56 | 1,406 | 30 |
A. phagocytophilum 16S rRNA (internal primer) |
AP-F (5′-GTCGAACGGATTATTCTTTATAGCTTGC-3′) AP-R (5′-CCCTTCCGTTAAGAAGGATCTAATCTCC-3′) |
56 | 926 | 30 |