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. 2018 Dec 29;18:379. doi: 10.1186/s12870-018-1564-2

Table 2.

Statistics of the assembled transcriptome from P. pinaster embryo development

Reference transcriptome
Total assembled transcripts 67,429
ExN50a 1653 bp
Shorter assembled transcript length (transcript) 148 bp (Pp11025)
Longer assembled transcript length (transcript) 12,752 bp (Pp28188)
Mean length 999 bp
Median length 627 bp
Transcripts without N’s bases 65,852
Mean gap percentage per transcript length 0.2%
Predicted coding transcripts 58,527
Predicted non-coding transcripts 8896

aExN50 = transcript length metric that considers the top most highly expressed transcripts and means that at least 50% of the assembled transcript nucleotides were found in transcripts that were at least this length