Table 1.

Summary of NGS data of T1 samples

Replicate	Sample	Paired-end clean reads (fwd + rev)	Unmapped reads (%)	Mapped reads (%)	Contigs	GC (%)
1	Control	115,806,338	47,978,266 (41.50%)	67,828,072 (58.50%)	68,042,571	50.4
	3 d.p.i	116,036,532	48,074,890 (43.17%)	63,288,794 (56.83%)	63,473,939	50.3
	7 d.p.i	99,856,770	45,959,348 (46.03%)	62,010,298 (53.97%)	62,204,733	49.0
	11 d.p.i	96,334,214	39,143,968 (40.63%)	55,881,644 (59.37%)	56,049,226	49.9
2	Control	111,852,414	47,513,392 (42.48%)	64,339,022 (57.52%)	64,545,409	50.1
	3 d.p.i	111,363,684	50,771,616 (45.59%)	65,264,916 (54.41%)	65,460,036	49.6
	7 d.p.i	107,969,646	42,963,067 (39.79%)	56,893,703 (60.21%)	57,072,615	48.8
	11 d.p.i	95,025,612	39,734,017 (41.81%)	56,600,197 (58.19%)	56,777,437	49.3