Table 13.
Prediction results on seven independent PPIs datasets, PPIs of H. sapiens are used as the training set
| Species | Test pairs | Negative | ||
|---|---|---|---|---|
| NIP-SS | NIP-RW | Sub | ||
| C. elegans | 4013 (interactions) | 86.10% | 78.11% | 94.42% |
| E. coli | 6984 (interactions) | 85.34% | 79.65% | 92.68% |
| H. sapiens | 1412 (interactions) | 86.20% | 85.03% | 96.29% |
| H. pylori | 1420 (interactions) | 81.86% | 79.15% | 92.28% |
| M. musculus | 313 (interactions) | 85.64% | 80.66% | 96.10% |
| Mammalian | 1937 (non-interactions) | 15.69% | 18.58% | 4.67% |
| Mammalian-imbalanced | 2250 (313 interactions, 1937 non-interactions) | 23.45% | 27.56% | 17.75% |