Table 1.
Reference | RNA-seq | |||||
---|---|---|---|---|---|---|
Bot. variety | crispum | crispum | latifolium | |||
Cultivars | “Domari” | “Domari” | “Imari” | “Myrna” | “Confiance” | “Flester” |
Tissuesa | A, S, L, R | L | L | L | L | L |
Stagesb | T, H | H | H | H | H | H |
Replicates | – | 2 | 2 | 3 | 3 | 3 |
Read types | 2 × 100 bp | 1 × 50 bp | 1 × 50 bp | 1 × 50 bp | 1 × 50 bp | 1 × 50 bp |
Raw reads | 246,347,186 | 19,975,333 | 20,846,549 | 10,836,889 | 23,364,091 | 22,375,987 |
HQR (%)c | 97.2 | 98.3 | 97.4 | 98.3 | 98.9 | 98.1 |
aA, apexes; S, stems; L, leaves; R, roots
bT, transplant; H, harvest
cHigh-quality reads, mean values for each group of replicates are reported