Table 6.
Differentially expressed genes (DEGs) encoding PR proteins and other proteins of basal immune response
| Protein categories | B.9-24* | B.9-48 | B.9-72 | G.935-24 | G.935-48 | G.935-72 |
|---|---|---|---|---|---|---|
| Chitinase | 13 | 11 | 17 | 8 | 11 | 0 |
| PR-4 | 2 | 2 | 2 | 1 | 2 | 0 |
| Thaumatin | 1 | 1 | 5 | 3 | 5 | 0 |
| Patatin | 15 | 20 | 17 | 13 | 18 | 1 |
| Laccase | 6 | 7 | 6 | 7 | 4 | 1 |
| Germin | 2 | 8 | 8 | 6 | 5 | 0 |
| Nudix hydrolase | 1 | 6 (−2) | 0 | 2 | 2 | 0 |
| Mandelonitrile lyase | 5 | 9 | 7 | 3 | 3 | 1 |
| Protein SRG1 | 2 | 11 (−9) | 7 | 4 | 3 | 0 |
| L-ascorbate oxidase | 0 | 8 (−4) | 5 | 0 | 3 | 0 |
| Peroxidase | 10 | 12 | 19 | 4 (−1) | 6 | 1 |
| Lignin-forming anionic peroxidase | 3 | 3 | 3 | 3 | 3 | 0 |
| Polyphenol oxidase | 1 | 4 | 4 | 0 | 0 | 0 |
| Pectin esterase inhibitor | 1 | 5 (−4) | 0 | 2 | 1 | 0 |
| Callose synthase | 0 | 3 (−3) | 0 | 0 | 0 | 0 |
Values are the total number of DEGs from root samples at different timepoints for both cultivars. The numbers in parentheses with a “−” indicate the downregulated DEGs, if present, among all DEGs identified from a specific genotype/timepoint