Table 1.
Lists of plasmids in different incompatibility groups.
| Incompatibilitya | Representative plasmid (original host)b | Accession numberc | RIPd | MOBe | MPFe | Host rangef | Reference |
|---|---|---|---|---|---|---|---|
| Inc groups | |||||||
| A/C1 (=IncA) | RA1 (Aeromonas hydrophila) | NC_012885 | RepA | MOBH | MPFF | Gammaproteobacteria | [151] |
| A/C2 (=IncC) | pRMH760 (Klebsiella pneumoniae) | KF976462 | RepA | MOBH | MPFF | Gammaproteobacteria | [152] |
| IncB/O | R3521 (Escherichia coli) | GU256641 | RepA | MOBP | MPFI | Escherichia | [153] |
| IncD | R711b (Providencia) | NA | NA | NA | NA | Escherichia, Salmonella, Proteus | [154] |
| IncFI | F (Escherichia coli) | AP001918 | RepE (for RepFIA replicon) | MOBF | MPFF | Enterobacteriaceae, Yersiniaceae | [155] |
| IncFII | R1 (Salmonella enterica) | KY749247 | RepA | MOBF | MPFF | Escherichia, Salmonella | [156] |
| IncG/U (=IncP-6) | Rms149 (Pseudomonas aeruginosa) | AJ877225 | RepA | MOBP | – | Proteobacteria | [157,158] |
| RA3 (Aeromonas hydrophila) | DQ401103 | ||||||
| IncH | R27 (Salmonella typhi) | AF250878 | RepHI1A, RepHI1B | MOBH | MPFF | Enterobacteriaceae, Yersiniaceae, Erwiniaceae | [159] |
| IncI | R64 (Salmonella enterica) | AP005147 | RepZ | MOBP | MPFI | Escherichia, Salmonella, Shigella | [160] |
| IncJ | R391 (Providencia rettgeri) | AY090559 | – | MOBH | MPFF | NA | [161] |
| IncK | R387 (Shigella flexneri) | NCTC50022 | MOBP | MPFI | NA | [162] | |
| IncL | R471 (Serratia marcescens) | KM406489 | RepA | MOBP | MPFI | Proteobacteria | [163,164] |
| pKOI-34 (Klebsiella oxytoca) | AB715422 | ||||||
| IncM | R69 (Salmonella enterica) | KM406488 | RepA | MOBP | MPFI | Proteobacteria | [165] |
| pEL60 (Erwinia amylovora) | NC_005246 | ||||||
| IncN | N3 (Escherichia coli) | NC_015599 | RepA | MOBF | MPFT | Escherichia, Klebsiella, Salmonella | [166] |
| IncP (=IncP-1) | RK2 (Pseudomonas aeruginosa) | BN000925 | TrfA | MOBP | MPFT | Proteobacteria | [167] |
| IncQ | RSF1010 (Escherichia coli) | M28829 | RepABC | MOBQ | – | Proteobacteria | [168] |
| IncR | pKP1780 (Klebsiella pneumoniae) | JX424614 | RepB | – | – | Klebsiella | [169] |
| IncS (=IncHI2) | R478 (Serratia marcescens) | BX664015 | RepHIA | MOBH | MPFF | Serratia | [170] |
| IncT | Rts1 (Proteus vulgaris) | AP004237 | MOBH | MPFF | Proteus, Citrobacter | [171] | |
| IncV | R753 (Escherichia coli) | NCTC50521 (planned) | NA | NA | NA | Proteus | [172] |
| IncW | R388 (Escherichia coli) | NC_028464 | RepA | MOBF | MPFT | Salmonella, Escherichia, Providencia | [173] |
| IncX | R6K (Escherichia coli) | NCTC50005 | π | MOBP | MPFT | Enterobacteriaceae | [174] |
| IncY | P1 (Escherichia virus) | AF234172 (phage P1 mod749::IS5 c1–100) | RepA | – | – | Enterobacteriaceae | [175,176] |
| pMCR-1-P3 (Escherichia coli) | KX880944 | ||||||
| IncZ | pEI545 (Klebsiella pneumoniae) | M93064 (partial) | RepA | NA | NA | Klabsiella | [162] |
| PromA | pMRAD02 (Methylobacterium radiotolerans) | NC_010509 | RepA | MOBP | MPFT | Proteobacteria | [[177], [178], [179]] |
| pIPO2 (gunknown) | AJ297913 | ||||||
| pSN0729-62 (gunknown) | AP018705 | ||||||
| IncP-9 | pM3 (Pseudomonas putida) | AF078924 (partial) | Rep | MOBF | MPFT | Pseudomonas, Escherichia | [180,181] |
| NAH7 (Pseudomonas putida) | NC_007926 | ||||||
| Representative cloning vectors | |||||||
| Not assigned | pUC18/19, pET, pBluescript | L09136 | pMB1 copy-up type, pMB1 type, pMB1 copy-up type | – | – | Escherichia | [175] Merck Millipore[182] |
| Not assigned | pACYC148 | X06403 | p15A type | – | – | Escherichia | [183] |
| Not assigned | pBBR1MCS (Bordetella bronchiseptica) | NC_025015 | pBBR1 Rep | MOBV | – | Proteobacteria | [184] |
| Not assigned | pSC101 (Salmonella enterica) | NC_002056 | RepA | MOBQ | – | Salmonella, Escherichia | [185] |
| Not assigned | pABC1 (Rhizobium etli) | KY031728 | p42b RepC | – | – | Rhizobiales | [44] |
| Not assigned | pME6041 (Pseudomonas sp.) | AF118812 | pVS1 RepA | – | – | Proteobacateria | [65] |
Several Inc. groups are identical; e.g. IncG = IncU.
Representative plasmids are listed based on Lawley et al. [186].
Accession numbers in National Center for Biotechnology Information (NCBI) GenBank and RefSeq (https://www.ncbi.nlm.nih.gov/Sequin/acc.html) and Wellcome Sanger Institute (prefix “NCTC” https://www.sanger.ac.uk/resources/downloads/plasmids).
Names of replication initiation protein (RIP). “NA” indicates that the nucleotide sequences of the plasmid are not available.
Classification of MOB classes and MPF types is based on Smillie et al. [132] and Guglielmini et al. [187]. “-” indicates that the genes involved in conjugation have not been detected, whereas “NA” indicates that the nucleotide sequences of the plasmid are not available.
Plasmid host range determined based on genome sequencing projects (hosts in which a plasmid has been found) and/or filter mating assays.
Original hosts are unknown because exogenous plasmid capturing was used.