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. Author manuscript; available in PMC: 2019 Jan 2.
Published in final edited form as: Methods Mol Biol. 2018;1757:371–397. doi: 10.1007/978-1-4939-7737-6_13

Figure 9. Selecting genome and annotation threshold for TremaPath usage.

Figure 9.

On the main TremaPath page, clicking on the “Species-specific TremaPath comparisons” link takes the user to a page (A) where the user can select the species and assembly of interest. Clicking on “View in TremaPath” link leads to a page (B) that shows the distribution of KOs assigned at different E-value thresholds, with colors distinguishing low, medium and high confidence annotation. The user can indicate the E-value threshold they want by filling in the exponent and clicking the Submit button and confirming their input at the next page (C).