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. Author manuscript; available in PMC: 2019 Jan 2.
Published in final edited form as: Methods Mol Biol. 2018;1757:371–397. doi: 10.1007/978-1-4939-7737-6_13

Table 1.

Available Illumina RNAseq reads

Nematode Species # RNAseq
reads		 Stages/Tissues Accession ids
Ancylostoma caninum 401157883 L2, L3(non-activated),
L3(untreated), female,
male, oesophagus,gut		 SRX1971542,SRX1971543,
SRX1971544,SRX1971545,
SRX1971546,SRX1971547,
SRX1971548
Ancylostoma ceylanicum 1410548651 L3(non-activated),
L3(activated),
L3(infective),
48hr L3, 72hr L3,
72hr L4, female,
male, L4 8day female,
24hr small intestine,
24hr stomach, gut,		 SRX1116899,SRX1116900,
SRX1116901,SRX1116902,
SRX1116903,SRX1116904,
SRX1116905,SRX1116906,
SRX1116907,SRX1116908,
SRX1116909,SRX1116910,
SRX1116911,SRX1116912,
SRX1116913,SRX1116915,
SRX1116916,SRX1116917,
SRX1116918,SRX1116919,
SRX1116920,SRX1116921,
SRX1116922,SRX1116923,
SRX1127457
Ascaris suum 2259230956 female head, male head,
female pharynx,
male pharynx,
female intestine,
male intestine,
anterior intestine,
mid intestine,
posterior intestine,
repro-associated
unattached intestine,
whole intestine,
24hr anterior intestine
(treatment: hsiRNA2),
24hr anterior intestine
(treatment: hsiRNA5),
24hr posterior intestine
(treatment: hsiRNA2),
24hr posterior intestine
(treatment: hsiRNA5),
ovary, uterus,
seminal vesicle, testis,
Whole worm		 SRX1013923,SRX1013925,
SRX1013926,SRX1013928,
SRX1013929,SRX1013930,
SRX1013931,SRX1013932,
SRX1013933,SRX1013934,
SRX1013935,SRX1013936,
SRX1013937,SRX1013938,
SRX1013939,SRX1013940,
SRX1013941,SRX1013942,
SRX1013943,SRX1013944,
SRX1013945,SRX1013946,
SRX1013948,SRX1013949,
SRX1013950,SRX1013951,
SRX1013953,SRX1013954,
SRX1013956,SRX1013957,
SRX157781,SRX278110,SRX278111,
SRX278113,SRX278114,SRX278115,
SRX278116,SRX278117,SRX278118,
SRX278119,SRX278120,SRX278121,
SRX278122,SRX278123,SRX278124,
SRX278125,SRX278126,SRX278127,
SRX278128,SRX278129,SRX278130,
SRX278131,SRX278133,SRX278134,
SRX278135,SRX278136,SRX278137,
SRX278138,SRX278139,SRX278140,
SRX278141,SRX278142,SRX278143,
SRX278144,SRX278151,SRX278152,
SRX278153,SRX278154,SRX278155,
SRX278156,SRX278157,SRX278158,
SRX278159,SRX278160,SRX278161,
SRX278162,SRX278163,SRX278164,
SRX278165,SRX278166
Dictyocaulus viviparus 821515897 L1, L2, L3, L4,
L5(mixed), L5(female),
L5(male), female,
male, egg, hypobiotic
larvae		 SRX371002,SRX693266,SRX693267,
SRX371003,SRX693295,SRX868541,
SRX371004,SRX371005,SRX371006,
SRX371007,SRX371008,SRX693298,
SRX693301,SRX371010,SRX371011,
SRX371012,SRX693296,SRX693299,
SRX693297,SRX371009,SRX693300,
SRX371413,SRX693302,SRX693304,
SRX693303
Haemonchus contortus 184431397 female intestine,
male intestine		 SRX736496,SRX736495
Necator americanus 37157105 L3, adult SRX202018,SRX202022
Oesophagostomum
dentatum 		654919328 L2, L3, L4, female,
male, total rna(drug
resistant population),
total rna(drug
susceptible population)		 SRX2085121,SRX2085118,
SRX2085106,SRX2085107,
SRX2085122,SRX2085126,
SRX2085123,SRX2085109,
SRX2085108,SRX2085110,
SRX2085112,SRX2085113,
SRX2085125,SRX2085127,
SRX2085111,SRX2085124,
SRX2085119,SRX2085115,
SRX2085116,SRX2085114,
SRX2085117,SRX2085120
Teladorsagia circumcincta 226574759 total rna(anthelmintic
resistant), total rna
(anthelmintic
susceptible)		 SRX1507696,SRX1507697,
SRX1507698
Trichuris suis 693989167 10 day larvae,
16 day larvae,
17 day larvae,
21 day larvae,
28 day larvae,
35 day larvae,
42 day larvae, female,
male, adult(mixed),
female anterior body,
Male anterior body,
ovary, testis		 SRX1838979,SRX1838981,
SRX1838978,SRX1838982,
SRX1838974,SRX736471,
SRX736470,SRX1838977,
SRX1838980,SRX1838975,
SRX1838976,SRX1838983,
SRX1838985,SRX1838984,
SRX1838986
Trematode species
Fasciola hepatica 415324163 egg, metacercariae,
adult		 SRX1037419,SRX1037418,
SRX1037417,SRX1037421,
SRX1037416,SRX1037420,
SRX1798471,SRX1798472,
SRX1037423,SRX1037422,
SRX1798475,SRX1798474,
SRX1798473
Paragonimus skrjabini 49816749 adult SRX1507709
Paragonimus westermani 46468226 adult SRX1507710