Table 2.
Polymorphic nucleotides detected in buffalo NOD1 with their position and amino acid changes
| Location | SNP | Nucleotide position as per accession no. KP280085 | Transition/transversions | Syn/non-syn | Amino acid change | Domain region |
|---|---|---|---|---|---|---|
| Exon-1 | A/G | 113 | Transition | Syn | Gln38Gln | |
| G/A | 196 | Transition | Non-syn | Asp66Asn | CARD | |
| Exon-2 | G/C | 312 | Transversion | Syn | Leu104Leu | |
| C/T | 338 | Transition | Non-syn | Pro113Leu | Unknown | |
| Exon-3 | A/G | 556 | Transition | Non-syn | Thr186Ala | Unknown |
| C/A | 606 | Transversion | Syn | Gly202Gly | ||
| C/T | 795 | Transition | Syn | Pro265Pro | ||
| G/A | 797 | Transition | Non-syn | Gly266Glu | NBD | |
| C/T | 990 | Transition | Syn | Leu330Leu | ||
| G/C | 1137 | Transversion | Non-syn | Leu379Asp | Unknown | |
| C/T | 1275 | Transition | Syn | Phe425Phe | ||
| C/T | 1362 | Transition | Syn | Arg454Arg | ||
| C/T | 1365 | Transition | Syn | Ala455Ala | ||
| C/T | 1428 | Transition | Syn | Phe476Phe | ||
| G/C | 1482 | Transversion | Non-syn | Gln494His | Unknown | |
| G/A | 2016 | Transition | Syn | Ala672Ala | ||
| C/T | 2058 | Transition | Syn | Cys686Cys | ||
| Exon-5 | C/T | 2316 | Transition | Syn | Val772Val | |
| Exon-6 | A/C | 2394 | Transversion | Syn | Thr798Thr | LRR |
| Exon-7 | C/T | 2475 | Transition | Syn | Ile825Ile | |
| Exon-9 | C/T | 2649 | Transition | Syn | Asp883Asp | |
| G/C | 2661 | Transversion | Non-syn | Glu887Asp | LRR | |
| Exon-11 | A/C | 2832 | Transversion | Syn | Val944Val |