Table 5.
Additional information of each tool.
| Predictors | Integrated programs | Integrated database |
|---|---|---|
| Alien Hunter | No | No |
| GI Hunter | IVOMa | No |
| GIPSy | SIGI-HMMb/HMMER3c/BLASTPd | PFAMe/MVIRDBf/ARDBg/CARDh/COGi/NODMUTDBj/tRNADBk |
| IslandViewer4 | SIGI-HMM/MAUVEl | VFDBm/PATRICn/VICTORSo/CARD |
| Predict Bias | No | VFDB |
| Zisland Explorer | GC-Profile | No |
a
(Interpolated variable order motifs),
b
(Genomic data statistical analysis tool),
c
(Sequence lookup tool),
d
(Tool to compare sequence information in amino acids),
e
(Protein family database),
f
(Microbial database of protein, toxins, virulence factors, and antibiotic resistance genes for bio-defense applications),
g
(Antibiotic resistance genes database),
h
(Comprehensive antibiotic resistance database),
i
(Clusters of orthologous groups of proteins),
j
(database for genes and mutants involved in symbiosis),
k
(Transfer RNA database),
l
(Genome sequence alignment tool),
m
(Virulence factors database),
n
(Bacterial bioinformatics database and analysis resource),
o
(Pathogen-host interaction data integration and analysis system database).