Table 7.
Products of the 16 gold standard gis of Escherichia coli cft073 based on reference articles.
| GIs Gold standarda | tRNAb | Transposase | Integrase | GC% contentc (%) | Hyp. prot.d | Unch. prot.e | Vir. genes.f | Total CDSg |
|---|---|---|---|---|---|---|---|---|
| 1–GI | leuX | 0 | 1 | 48.15 | 6 | 0 | 0 | 15 |
| 2–PAI | pheU | 11 | 3 | 47.57 | 16 | 4 | 1 | 61 |
| 3–GI | selC | 10 | 2 | 47.04 | 23 | 3 | 1 | 70 |
| 4–PAI | pheV | 20 | 3 | 47.08 | 41 | 8 | 9 | 124 |
| 5–PAI | metV | 0 | 0 | 53.37 | 8 | 1 | 3 | 25 |
| 6–ϕ: | Absent | 1 | 1 | 49.32 | 20 | 5 | 0 | 49 |
| 7–GI | Absent | 7 | 1 | 49.68 | 19 | 1 | 2 | 37 |
| 8–GI | asnW | 2 | 1 | 53.12 | 4 | 0 | 1 | 26 |
| 9–PAI | asnT | 1 | 1 | 58.27 | 1 | 0 | 1 | 15 |
| 10–PAI | serU | 0 | 1 | 37.65 | 12 | 5 | 1 | 19 |
| 11–PAI | absent | 4 | 2 | 50.23 | 23 | 4 | 1 | 74 |
| 12–ϕ: | Absent | 0 | 1 | 49.78 | 9 | 4 | 0 | 14 |
| 13–ϕ: | Absent | 1 | 1 | 50.97 | 28 | 5 | 0 | 51 |
| 14–PAI | serX | 12 | 3 | 48.76 | 46 | 5 | 4 | 102 |
| 15–ϕ: | Absent | 0 | 1 | 50.45 | 15 | 1 | 0 | 42 |
| 16–PAI | aspV | 12 | 0 | 47.43 | 38 | 5 | 5 | 83 |
a
(Gold standard GIs),
b
(Transfer RNA),
c
(Percentage of guanine and cytosine content in the region),
d
(Hypothetical proteins),
e
(Uncharacterized proteins),
f
(Virulence genes),
g
(Total encoding sequences),
ϕ: (Island containing predominant bacteriophage DNA).
PAI, Pathogenicity island.