Table 1. Kinetic Parameters for ScOMPDC-Catalyzed Decarboxylation of OMP and FOMPa.
OMPb |
FOMPc |
|||||
---|---|---|---|---|---|---|
ScOMPDC | kcat/Km (M–1 s–1) | ΔΔG⧧ (kcal/mol)d | kcat/Km (M–1 s–1) | ΔΔG⧧ (kcal/mol)d |
|
|
wild-type | 1.1 × 107 | 1.2 × 107 | 1.1 | |||
Q215A | 2.6 × 105 | 2.2 | 2.0 × 106 | 1.1 | 7.7 | |
Y217F | 1.8 × 105 | 2.4 | 1.1 × 106 | 1.4 | 6.1 | |
R235A | 910 | 5.6 | 1.6 × 105 | 2.6 | 180 | |
S154A | 630 | 5.8 | 2.9 × 105 | 2.2 | 460 | |
S154A/Q215A | 380 | 6.1 | 7.7 × 104 | 3.0 | 200 | |
S154A/Y217F | 0.75 ± 0.01 | 9.8 | 520 ± 10 | 5.9 | 700 | |
S154A/R235A | 0.027 ± 0.004 | 11.7 | 20 ± 2 | 7.9 | 740 | |
Q215A/Y217F | 3.4 × 103 | 4.8 | 5.3 × 104 | 3.2 | 16 | |
Q215A/R235A | 14 | 8.0 | 7200 | 4.4 | 510 | |
Y217F/R235A | 4.1 | 8.8 | 820 | 5.7 | 200 | |
S154A/Q215A/Y217F | 0.28 ± 0.02 | 10.4 | 250 ± 10 | 6.4 | 890 | |
S154A/Q215A/R235A | 0.018 ± 0.001 | 12.0 | 10 ± 1 | 8.3 | 560 | |
S154A/Y217F/R235A | 0.0006 ± 0.0002f | 14.0 | 0.44 ± 0.02 | 10.1 | ||
Q215A/Y217F/R235A | 0.037 | 11.6 | 28 | 7.7 | 760 | |
S154A/Q215A/Y217F/R235A | 0.0016 ± 0.0005f | 13.4 | 1.1 ± 0.1 | 9.6 |
Conditions: pH 7.1 (10 mM MOPS), 25 °C and I = 0.105 (NaCl).
The new values for this manuscript are in bold type. The other rate constants are from ref (11) or (15). The quoted uncertainty is the standard error from the least-squares fit of the kinetic data to the appropriate kinetic equation.
The new values for this manuscript are in bold type. The other rate constants are from ref (10).The quoted uncertainty in the original values is the average of two or more determinations of kcat/Km.
Calculated from the ratio of the values of kcat/Km for wild-type and mutant ScOMPDC-catalyzed decarboxylation of OMP or FOMP.
The ratio of the values of kcat/Km for OMPDC-catalyzed decarboxylation of OMP and FOMP.
No detectable activity toward decarboxylation of OMP: kcat/Km < 0.006 M–1 s–1. The rate constants were estimated from kcat/Km for mutant enzyme-catalyzed decarboxylation of FOMP (see text). The range of values is calculated from the estimated uncertainty of ±50% in for OMPDC-catalyzed decarboxylation of OMP and FOMP.