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. Author manuscript; available in PMC: 2020 Jan 1.
Published in final edited form as: Mol Cancer Ther. 2018 Oct 15;18(1):213–226. doi: 10.1158/1535-7163.MCT-18-0554

Table 2.

Mapping drug distribution in tumor microenvironment

Process Average Time Notes
Drug Injection to mouse tumor model - -Intravenous injection of fluorescent macromolecular drug
Fixing, embedding, and macrosectioning 1 h -Fixing tumor in 2% paraformaldehyde (PFA) for 10 min
-Embedding tumor in 2% agarose gel
-Macro-sectioning at 400 μm thickness
-Fixing macrosections in 2% PFA for 5 min
Immunofluorescence staining 18 h -Incubating with 4 different fluorescent primary antibodies at 4°C
Washing and fixing 40 min -Washing with PBS x3 times, and fixing in 2% PFA for 10 min
Tissue clearing 3 h -Incubating sequentially for 1 h each in 20%, 50%, 80% D-fructose solutions (containing 0.3% (v/v) α-thioglycerol) at 25°C
Confocal imaging 1 h/macrolayer (6×5×0.4 mm3) -Using 10X objective (X/Y/Z grid resolutions=1.82/1.82/7.5 μm)
-Using 5 different excitation and emission filters
-Using 40X objective for high-resolution 3D imaging of interest area
Image processing and analysis 1 day -Using Fiji software and created macros for 3D image reconstruction and analysis