Table 2.

Summary of Annotation Databases and Postanalysis Tools Helpful in Making Sense of Results in Computational Analytics

Annotation database/Tool name	Description	Link
UniProt	Comprehensive proteomics knowledge base (functions, pathways, sequences, modifications, literature references, ID conversion).	https://www.uniprot.org
BioMart	Gene-centric database with ID conversion, genomic features (such as exons, introns, untranslated regions), sequences, positions of genes in the genome.	https://www.ensembl.org/biomart/martview/
NCBI Genome Data Viewer	A Web tool for exploration and analysis of eukaryotic genome assemblies.	https://www.ncbi.nlm.nih.gov/genome/gdv/
UCSC Genome Browser	A collection of tools for analysis of genomes with a plethora of available data ‘tracks’ such as epigenetic signals and genomic features.	https://genome.ucsc.edu/
StringDB	A database of known and predicted protein–protein interactions. Integrates functional relationship data from various sources.	https://www.string-db.org/
BioGRID	Curated database of physical and genetic interactions based on various experimental sources.	https://thebiogrid.org/
DAVID	Gene Ontology and pathway analysis Web tool for calculation of functional enrichments in lists of genes or proteins.	https://david.ncifcrf.gov/
Enrichr	Web tool for calculating various functional enrichments in lists of genes or proteins.	https://amp.pharm.mssm.edu/Enrichr/
g:Profiler	Web tools for functional profiling of groups of genes or proteins. Contains useful ID conversion and orthology mapping tools.	https://biit.cs.ut.ee/gprofiler/