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. 2019 Jan 3;20:1. doi: 10.1186/s12864-018-5379-1

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Manhattan plots showing associations of all SNPs with five traits and quantile-quantile (Q-Q) plots of the GLM (black dots) for five traits (a. DW, b. EW, c. HEW, d. BW42, e. WW). One SNP reached genome-wide significance for the five above traits. In Manhattan plots, SNPs are plotted on the x-axis according to their position on each chromosome, against association with these traits on the y-axis (shown as −log₁₀P-value). Blue solid line indicates suggestive significance association (P = 3.48E− 05), and red solid line shows genome-wide significance with a P-value threshold of 1.74E− 06. In Q-Q plots, expected P-values under the null hypothesis are plotted on the x-axis and observed P-values on the y-axis. The estimated genomic inflation factor λ ranged from 1.03–1.06