TABLE Features. of the Leishmania braziliensis assembled genomes and sequencing strategies.
Features | Assembly-2007(5) | Assembly-2011 28 | Assembly-2018(13) | This work |
Chromosomes (scaffolds) | 37 | 35 | 3782 | 35 |
Number of contigs | 1041 | 103 | 13601 | 35 |
N50 | 57,784 bp | - | 20,600 bp | 1,063,631 bp |
Annotated genes | 8428 | - | 8161 | 8395 |
Annotated CDS: | 8153 | 8357 | 8001 | 8244 |
- Functional annotation | - | - | - | 4862 |
- Hypothetical proteins | - | - | - | 3382 |
Annotated pseudogenes | 161 | - | 65 | 33 |
Annotated structural genes | 114 | - | 95 | 118 |
Number of gaps | 2097 | - | 3352 | 0 |
Number of Ns | 92,079 | - | ~316,778 | 0 |
Haploide genome size (bp) | 31,996,772 | 31,997,773 | 30,009,653 | 32,301,632 |
Coverage (mean) [sequencing method] | 6× [Capillary sequencing] | 105× [Illumina] 7× [Capillary] | 88× [Illumina] | 363× [Illumina] 96× [PacBio] |
-: data not found.