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. 2018 Dec 12;3(1):250–263. doi: 10.1210/js.2018-00377

Table 1.

Summary of the Analysis Targeting Candidate Genes


DEX
DEX × Sex
Data From the Literature
Gene No. of Important Probes Probe Location Direction of Change in Methylation No. of Important Probes Probe Location Tissue Cohort Reference
BDNF 2 TSS1500; TSS200; 5′UTR; body Hypermethylation 2 TSS1500; TSS200; 5′UTR; body; first exon Peripheral blood cells Major depression [24]
HSD211B2 1 Body Hypermethylation 1 Body Placenta Newborns [28]
NR3C1 2 TSS1500; 5′UTR Hypermethylation 1 5′UTR Cord blood and maternal blood Maternal depression [26]
NR3C2 1 5′UTR Hypermethylation 1 5′UTR N.A. N.A.
FKBP5 3 TSS1500; 5′UTR Hypermethylation 3 TSS1500; 5′UTR Peripheral blood cells Childhood trauma [25]
LTA 3 TSS1500; body Hypermethylation 6 TSS1500; TSS200; 5′UTR; first exon CD3+ T cells PNMS exposure [12]
TNF 9 TSS1500; first exon; body; 3′UTR Hypermethylation 4 TSS1500; first exon; 3′UTR N.A. N.A.
SCG5 2 5′UTR Hypermethylation 2 5′UTR CD3+ T cells PNMS exposure [12]
SLC6A4 1 Body Hypermethylation 1 Body T Cells and monocytes Childhood aggression [27]

For each gene, the number of important probes, their location, and the direction of change in methylation are presented. Probes were analyzed in a linear model, including age and sex as covariates. Significance was defined as an uncorrected P < 0.05. NR3C2 and TNF were not identified in the literature but were included as candidate genes as a result of their biological roles relative to the candidate genes NR3C1 and LTA.