Table 1.
|
DEX |
DEX × Sex |
Data From the Literature |
|||||
---|---|---|---|---|---|---|---|---|
Gene | No. of Important Probes | Probe Location | Direction of Change in Methylation | No. of Important Probes | Probe Location | Tissue | Cohort | Reference |
BDNF | 2 | TSS1500; TSS200; 5′UTR; body | Hypermethylation | 2 | TSS1500; TSS200; 5′UTR; body; first exon | Peripheral blood cells | Major depression | [24] |
HSD211B2 | 1 | Body | Hypermethylation | 1 | Body | Placenta | Newborns | [28] |
NR3C1 | 2 | TSS1500; 5′UTR | Hypermethylation | 1 | 5′UTR | Cord blood and maternal blood | Maternal depression | [26] |
NR3C2 | 1 | 5′UTR | Hypermethylation | 1 | 5′UTR | N.A. | N.A. | – |
FKBP5 | 3 | TSS1500; 5′UTR | Hypermethylation | 3 | TSS1500; 5′UTR | Peripheral blood cells | Childhood trauma | [25] |
LTA | 3 | TSS1500; body | Hypermethylation | 6 | TSS1500; TSS200; 5′UTR; first exon | CD3+ T cells | PNMS exposure | [12] |
TNF | 9 | TSS1500; first exon; body; 3′UTR | Hypermethylation | 4 | TSS1500; first exon; 3′UTR | N.A. | N.A. | – |
SCG5 | 2 | 5′UTR | Hypermethylation | 2 | 5′UTR | CD3+ T cells | PNMS exposure | [12] |
SLC6A4 | 1 | Body | Hypermethylation | 1 | Body | T Cells and monocytes | Childhood aggression | [27] |
For each gene, the number of important probes, their location, and the direction of change in methylation are presented. Probes were analyzed in a linear model, including age and sex as covariates. Significance was defined as an uncorrected P < 0.05. NR3C2 and TNF were not identified in the literature but were included as candidate genes as a result of their biological roles relative to the candidate genes NR3C1 and LTA.