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Phylogenetic tree of 16S rDNA from endolithic cultures (N2 and N1), OTU1 and genome bins. The tree was generated using the maximum-likelihood method with 1000 bootstraps. Scale bar denotes 0.01 changes per nucleotide sites. Both sequences from cultures (each culture has two biological repeat), OTU1 and a complete 16S sequence from Bin 3 clustered with sequences of other coral-associated Prosthecochloris (CAP), forming the CAP clade
