Table 2.
Number of Shared, Derived Nuclear SNPs between G. davidsonii (Integrifolia) and G. aridum Accessions from Colima and Jalisco
| G. aridum (Colima) | G. aridum (Jalisco) | P Value | |
|---|---|---|---|
| Overall SNPs | 188,472 | 182,563 | 0.0005 |
| Chr01 SNPs | 12,808 | 12,808 | 1.0000 |
| Chr02 SNPs | 17,118 | 17,094 | 0.8941 |
| Chr03 SNPs | 11,956 | 11,353 | 0.0005 |
| Chr04 SNPs | 17,292 | 16,643 | 0.0005 |
| Chr05 SNPs | 18,950 | 18,065 | 0.0005 |
| Chr06 SNPs | 11,013 | 10,732 | 0.0600 |
| Chr07 SNPs | 15,822 | 14,649 | 0.0005 |
| Chr08 SNPs | 12,904 | 12,911 | 0.9795 |
| Chr09 SNPs | 15,131 | 14,922 | 0.2399 |
| Chr10 SNPs | 17,585 | 16,895 | 0.0005 |
| Chr11 SNPs | 15,741 | 14,941 | 0.0005 |
| Chr12 SNPs | 8,600 | 8,636 | 0.8081 |
| Chr13 SNPs | 13,552 | 12,914 | 0.0005 |
| Genic SNPs | 7,843 | 7,419 | 0.0015 |
| Number of genes | 4,808 | 4,721 | 0.3733 |
Note.—Previous research indicates that Colima G. aridum has Integrifolia-derived cytoplasm and nuclear sequences. Gossypium gossypioides was used for ancestral states.