Table 1.
Summary statistics of RNA-seq data and mapping results.
| Group | Sample Name | Raw Reads | Clean Reads | Mapped Reads (%) | Uniquely Mapped (%) | No: of Mapped Genes |
|---|---|---|---|---|---|---|
| 1 | R-mock (Rep 1) | 27,886,208 | 23,047,994 | 97.93 | 81.06 | 21,436 |
| R-mock (Rep 2) | 29,938,504 | 24,872,121 | 97.93 | 77.35 | 21,374 | |
| 2 | R-24 hpi (Rep 1) | 25,731,844 | 21,627,411 | 97.97 | 85.44 | 21,222 |
| R-24 hpi (Rep 2) | 27,210,026 | 22,621,023 | 97.96 | 79.42 | 21,175 | |
| 3 | R-48 hpi (Rep 1) | 27,175,390 | 22,690,068 | 97.67 | 76.36 | 21,356 |
| R-48 hpi (Rep 2) | 29,441,742 | 24,775,792 | 97.82 | 80.97 | 21,533 | |
| 4 | S-mock (Rep 1) | 19,181,092 | 16,133,709 | 97.59 | 76.95 | 20,966 |
| S-mock (Rep 2) | 27,938,220 | 23,227,317 | 97.07 | 84.29 | 21,381 | |
| 5 | S-24 hpi (Rep 1) | 30,978,162 | 26,197,946 | 97.31 | 79.66 | 21,429 |
| S-24 hpi (Rep 2) | 28,387,338 | 23,713,599 | 97.53 | 79.46 | 21,280 | |
| 6 | S-48 hpi (Rep 1) | 28,563,832 | 23,854,528 | 96.27 | 76.36 | 21,631 |
| S-48 hpi (Rep 2) | 26,601,354 | 21,881,482 | 97.36 | 77.45 | 21,565 | |
| Total | 329,033,712 | 274,642,990 |
Group 1, 2 and 3 comprise of mock, 24 and 48 hpi P. parasitica treated samples of resistant accession (Sp-R) whereas 4, 5 and 6 represent mock, 24 and 48 hpi P. parasitica treated samples of susceptible accession (Sp-S) respectively.