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. 2018 Nov 20;91(1):126–141. doi: 10.1021/acs.analchem.8b04746

Figure 11.

Figure 11

Workflows for the calculation of phosphosite localization probabilities by phosphoRS (left), and MaxQuant/Andromeda (PTM-score, right). Reproduced from Taus, T.; Köcher, T.; Pichler, P.; Paschke, C.; Schmidt, A.; Henrich, C.; Mechtler, K.J. Proteome Res.2011, 10, 5354–5362 (ref (125)). Copyright 2011 American Chemical Society. Reproduced from Cox, J.; Neuhauser, N.; Michalski, A.; Scheltema, R. A.; Olsen, J. V.; Mann, M. J. Proteome Res.2011, 10, 1794–1805 (ref (118)). Copyright 2011 American Chemical Society. Reprinted from Cell Rep., Vol. 8, Sharma, K., D’Souza, R. C. J., Tyanova, S., Schaab, C., Wiśniewski, J. R., Cox, J., Mann, M. Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling. pp. 1583–1594. (ref (131)). Copyright 2014, with permission from Elsevier.