Workflows for the calculation of phosphosite
localization probabilities
by phosphoRS (left), and MaxQuant/Andromeda (PTM-score, right). Reproduced
from Taus, T.; Köcher, T.; Pichler, P.; Paschke, C.; Schmidt,
A.; Henrich, C.; Mechtler, K.J. Proteome Res.2011, 10, 5354–5362 (ref (125)). Copyright 2011 American
Chemical Society. Reproduced from Cox, J.; Neuhauser, N.; Michalski,
A.; Scheltema, R. A.; Olsen, J. V.; Mann, M. J. Proteome Res.2011, 10, 1794–1805 (ref (118)). Copyright 2011 American
Chemical Society. Reprinted from Cell Rep., Vol. 8, Sharma, K., D’Souza, R. C. J., Tyanova, S., Schaab,
C., Wiśniewski, J. R., Cox, J., Mann, M. Ultradeep Human Phosphoproteome
Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling.
pp. 1583–1594. (ref (131)). Copyright 2014, with permission from Elsevier.