Table 1.

A list of the most frequently occurring fusion transcripts on the basis of fusion type and tissue type

Fusion type
Cis (5168)	Read-through (9313)	Intra-chromosomal (16 853)	Inter-chromosomal (51 635)
AT1G66900_AT1G66910 (67) AT1G29920_AT1G29930 (65) AT5G19770_AT5G19780 (57) AT1G29930_AT1G29920 (56)	ATCG00480_ATCG00470 (268) ATCG00810_ATCG00800 (184) AT3G59330_AT3G59320 (131) ATCG00580_ATCG00570 (115)	AT2G07725_AT2G07715 (95) ATCG00065_ATCG01230 (82) AT1G07940_AT1G07920 (80) AT2G36070_AT2G20510 (57)	AT1G07590_AT5G10100 (102) AT4G14960_AT1G50010 (95) AT5G38410_AT1G67090 (88) AT2G45330_AT5G23600 (78)
Tissue type
Seed (8608)	Seedling (36 530)	Leaf (7126)	Stem (831)
AT4G11845_AT4G11840 (15) AT4G14960_AT1G50010 (11) AT1G28660_AT1G28670 (9) AT2G15890_AT2G15880 (8)	ATCG00480_ATCG00470 (134) AT5G38410_AT1G67090 (76) ATCG00810_ATCG00800 (74) ATCG00580_ATCG00570 (68)	ATCG00480_ATCG00470 (26) AT1G66900_AT1G66910 (22) ATCG00810_ATCG00800 (18) AT3G59330_AT3G59320 (16)	ATCG00480_ATCG00470 (9) AT1G29920_AT1G29930 (7) AT1G29910_AT1G29920 (7) AT5G38410_AT1G67090 (6)
Root (8402)	Flower and floral parts (4176)	Whole plant (11 514)	Other (2910)
AT2G07725_AT2G07715 (33) ATCG00480_ATCG00470 (21) AT4G27090_AT5G10100 (19) AT4G18730_AT5G10100 (16)	AT4G35450_AT4G35460 (7) AT4G25290_AT4G25280 (7) ATCG00810_ATCG00800 (6) ATCG00190_ATCG00180 (6)	AT1G07590_AT5G10100 (88) ATCG00480_ATCG00470 (59) ATCG00810_ATCG00800 (52) AT3G02080_AT5G10100 (46)	AT3G59330_AT3G59320 (12) AT4G14960_AT1G50010 (11) AT3G61780_AT5G28400 (10) ATCG00580_ATCG00570 (9)