Table 2.

Condition-wise study of frequently occurring fusion transcripts

Condition	Number of samples	Samples having fusion	Ensembl gene1_gene2	Fusion type	Tissue type
Wild	138	6	AT1G04820_AT4G14960	Inter-chromosomal	14-day-old seedling, root, rosette leaf, seedling and silique
		6	AT2G36070_AT2G20510	Intra-chromosomal	14-day-old seedling, anther, hypocotyl, seed and seedling
		6	AT4G11845_AT4G11840	Read-through	14-day-old seedling, root, shoot, cotyledon, whole leaf explants with callus, whole plant and whole seedling
		6	ATCG00820_ATCG00810	Read-through	Callus, cell culture, root, rosette leaf and seedling
		7	AT4G30220_AT2G14285	Inter-chromosomal	Anther and rosette leaf
		7	ATCG00480_ATCG00470	Read-through	14-day-old seedling, cell culture, hypocotyl, Rosette leaf, seedling, shoot and cotyledon
Dark-adapted	5	2	ATCG00350_ATCG00340	Read-through	Cell culture and seedling
		2	ATCG00570_ATCG00560	Read-through	Cell culture
		2	ATCG00790_ATCG00780	Read-through	Cell culture
		2	ATCG00810_ATCG00800	Read-through	Cell culture and seedling
		2	ATCG00820_ATCG00810	Read-through	Cell culture
		2	ATCG01120_ATCG01110	Read-through	Cell culture and seedling
		3	ATCG00130_ATCG00120	Read-through	Cell culture and seedling
Drought stress	74	4	AT2G05070_AT2G05100	Read-through	Leaf and rosette leaf
		4	AT3G02065_AT3G02070	Read-through	Rosette leaf
		4	AT3G59330_AT3G59320	Read-through	Rosette leaf
		4	AT3G62310_AT2G47250	Inter-chromosomal	Rosette leaf
		4	AT4G08480_AT4G08470	Read-through	Rosette leaf
		5	AT1G60560_AT1G60590	Intra-chromosomal	Rosette leaf
Heat stress	141	12	ATCG00270_ATCG00280	Read-through	Aerial seedling, flower bud and seedling
		15	AT1G73320_AT1G73310	Read-through	Aerial seedling, flower bud and root
		16	AT3G09162_AT3G09160	Read-through	Aerial seedling, rosette leaf and seedling
		17	ATCG00810_ATCG00800	Read-through	Aerial seedling and flower bud
		18	AT3G59330_AT3G59320	Read-through	Aerial seedling, flower bud, Shoot Apical Meristem (SAM) and early stages leaf and seedling
		28	ATCG00480_ATCG00470	Read-through	Aerial seedling, seedling and whole plant
Oxidative stress	3	2	AT1G53670_AT1G53680	Read-through	Root
		2	AT3G25597_AT3G25600	Read-through	Root
		2	AT4G24413_AT4G24410	Read-through	Root
		2	AT5G56720_AT5G56730	Cis	Root
		2	ATCG00340_ATCG00330	Read-through	Root
		2	ATMG00410_AT2G07707	Inter-chromosomal	Root
		2	ATMG00600_AT2G07648	Inter-chromosomal	Root
		3	AT5G38344_AT5G38350	Read-through	Root
Nematode Heterodera schachtii infection	4	2	AT1G23870_AT1G23880	Read-through	Root
		2	AT1G29470_AT3G61260	Inter-chromosomal	Root
		2	AT5G24520_AT5G24510	Read-through	Root
Pseudomonas aeruginosa infection	16	3	AT1G76690_AT1G76680	Read-through	Root and shoot
		3	AT2G04100_AT2G04090	Read-through	Root and shoot
		3	AT2G05100_AT2G05070	Read-through	Shoot
		3	AT2G47110_AT3G52590	Inter-chromosomal	Root and shoot
Turnip crinkle virus infection	6	2	AT1G72610_AT1G29920	Intra-chromosomal	Leaf
		2	AT3G12120_AT2G34420	Inter-chromosomal	Leaf
		2	AT3G26395_AT5G27730	Inter-chromosomal	Leaf
		2	AT3G59330_AT3G59320	Read-through	Leaf
		2	AT4G01590_AT4G35685	Intra-chromosomal	Leaf
		2	AT4G15000_AT1G29910	Inter-chromosomal	Leaf
		2	AT5G19770_AT5G19780	Cis	Leaf
		2	ATCG00350_ATCG00340	Read-through	Leaf
		2	ATCG00480_ATCG00470	Read-through	Leaf
		2	ATCG00810_ATCG00800	Read-through	Leaf
Spaceflight grown	139	8	ATCG00480_ATCG00470	Read-through	Root
		9	AT2G25210_AT4G31985	Inter-chromosomal	Root
		9	AT4G27090_AT5G10100	Inter-chromosomal	Root
		13	AT2G07725_AT2G07715	Intra-chromosomal	Root
Nutrient deficient	22	4	AT1G26250_AT1G26255	Cis	Root
		4	AT4G24413_AT4G24410	Read-through	Root
		6	AT2G27010_AT2G27000	Read-through	Root
Abscisic acid treated	12	3	AT2G41200_AT2G41210	Read-through	Seedling
		3	AT5G22794_AT1G49940	Inter-chromosomal	Seedling
		3	ATCG00810_ATCG00800	Read-through	Leaf and seedling