Table 1.
The different sources of lncRNA transcripts used in LNCipedia 5. The number of unique transcripts and genes varies substantially between the different sources
| Source | Full dataset | High-confidence set | Unique transcripts | Unique genes |
|---|---|---|---|---|
| Broad Institute | 14 043 | 13 277 | 1627 (12%) | 21 (0.3%) |
| Ensembl release 92 - April 2018 | 25 075 | 22 551 | 8631 (34%) | 1334 (10.2%) |
| FANTOM CAT (stringent) | 24 756 | 22 067 | 24 750 (100%) | 2776 (42%) |
| NONCODE v4 | 77 529 | 62 918 | 46 124 (59%) | 24 901 (55.1%) |
| Refseq - NCBI Annotation Release 106 | 5188 | 4319 | 2718 (52%) | 97 (2.5%) |
| Sun and Gadad et al., 2015 | 2124 | 1672 | 2124 (100%) | 546 (34.3%) |
| Nielsen et al., 2014 | 7119 | 6775 | 7074 (99%) | 6119 (86.7%) |
| Hangauer et al., 2013 | 5296 | 5232 | 357 (7%) | 18 (0.4%) |
| Total number of unique transcripts | 127 802 | 107 039 | ||
| Total number of unique genes | 56 946 | 49 372 |