Table 2.
OpenProt (1.3) evidence collection output
| Conservation evidence | Translation evidence (Ribo-seq) | Protein evidence (MS) | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Sp # | Ref # | II_ # | IP_ # | St # | Ref # | II_ # | IP_ # | St # | Ref # | II_ # | IP_ # |
| Homo sapiens | 9 | 189 319 | 38 325 | 239 394 | 33 | 17 435 | 2048 | 5 696 | 62 | 113 006 | 1455 | 28 641 |
| Pan troglodytes | 9 | 63 408 | 28 930 | 148 989 | 0 | n/a | n/a | n/a | 0 | n/a | n/a | n/a |
| Mus musculus | 9 | 131 130 | 21 245 | 121 890 | 22 | 14 607 | 1 088 | 3081 | 28 | 61 440 | 165 | 2 877 |
| Rattus norvegicus | 9 | 82 951 | 5354 | 81 600 | 2 | 6661 | 202 | 870 | 8 | 21 282 | 19 | 410 |
| Bos taurus | 9 | 70 697 | 6086 | 88 550 | 0 | n/a | n/a | n/a | 1 | 12 778 | 5 | 37 |
| Ovis aries | 9 | 56 331 | 28 247 | 107 900 | 0 | n/a | n/a | n/a | 1 | 1 466 | 18 | 69 |
| Danio rerio | 9 | 81 958 | 19 560 | 8 965 | 2 | 9 | 1 | 0 | 7 | 26 114 | 263 | 386 |
| Drosophila melanogaster | 9 | 39 246 | 763 | 452 | 3 | 2453 | 39 | 113 | 3 | 9783 | 20 | 113 |
| Caenorhabditis elegans | 9 | 28 429 | 861 | 450 | 5 | 8142 | 161 | 84 | 0 | n/a | n/a | n/a |
| Saccharomyces cerevisiae S288c | 9 | 5842 | 5 | 38 | 20 | 5357 | 4 | 283 | 4 | 4028 | 0 | 20 |
Sp = Number of species evaluated for orthology relationships (not counting the queried species); St = number of studies re-analyzed by OpenProt; Ref = currently annotated CDS (RefORF); II_ = novel isoforms of known CDS; IP_ = novel CDS from alternative ORF (AltORF); n/a = when no dataset has been re-analysed for this species yet (OpenProt release 1.3). Conservation evidence = all proteins with at least one ortholog in at least one species. Translation evidence = all ORFs detect in at least one detection by PRICE analysis of Ribo-seq data. Protein evidence = all proteins with at least one unique peptide in at least one study.