. 2018 Nov 6;179(1):38–54. doi: 10.1104/pp.18.00848

Table 1. χ² test of proportions for predicted exact match introns inferred from RNA-seq mapping data in V. dahliae.

Pipeline	Predictions Matching RNA-seq	Predictions Not Matching	Predictions Missing	Specificity Less Than LoReAn-sF^a	Sensitivity Less Than LoReAn-sF^b
BAP-F	13,128	5,284	5,446	<0.0001	<0.0001
MAKER2	12,509	5,903	6,065	<0.0001	<0.0001
CodingQuarry	12,021	3,001	6,553	N.S.^c	<0.0001
GeneMark-ES-F	12,323	5,274	6,251	<0.0001	<0.0001
BRAKER1	11,491	4,739	7,083	<0.0001	<0.0001
Augustus	11,857	6,079	6,717	<0.0001	<0.0001
Reference annotation	13,935	4,145	4,639	N.S.^c	N.S.^c
LoReAn-sF	13,780	3,899	4,794	Not applicable	Not applicable

Column reports P values for the χ² test of proportions for the specificity metric

Column reports P values for the χ² test of proportions for the sensitivity metric

N.S., not significant with a P value greater than 0.05

Table 1. χ2 test of proportions for predicted exact match introns inferred from RNA-seq mapping data in V. dahliae.